Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC18.75■□□□□ 0.59
HOXA1P49639 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXA1P49639 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
HOXA1P49639 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC18.75■□□□□ 0.59
HOXA1P49639 RP9P-202ENST00000450133 1212 ntBASIC18.75■□□□□ 0.59
HOXA1P49639 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXA1P49639 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HOXA1P49639 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC18.75■□□□□ 0.59
HOXA1P49639 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HOXA1P49639 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXA1P49639 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXA1P49639 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
HOXA1P49639 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
HOXA1P49639 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXA1P49639 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXA1P49639 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXA1P49639 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
HOXA1P49639 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXA1P49639 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.73■□□□□ 0.59
HOXA1P49639 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
HOXA1P49639 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
HOXA1P49639 ECEL1P2-201ENST00000461596 1295 ntBASIC18.73■□□□□ 0.59
HOXA1P49639 AC093536.1-201ENST00000569153 554 ntBASIC18.73■□□□□ 0.59
HOXA1P49639 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
HOXA1P49639 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC18.73■□□□□ 0.59
HOXA1P49639 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HOXA1P49639 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HOXA1P49639 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HOXA1P49639 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC18.73■□□□□ 0.59
HOXA1P49639 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HOXA1P49639 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HOXA1P49639 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HOXA1P49639 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC18.72■□□□□ 0.59
HOXA1P49639 AC007375.3-201ENST00000600936 2314 ntBASIC18.72■□□□□ 0.59
HOXA1P49639 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HOXA1P49639 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC18.72■□□□□ 0.59
HOXA1P49639 MIR7108-201ENST00000614319 87 ntBASIC18.72■□□□□ 0.59
HOXA1P49639 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.72■□□□□ 0.59
HOXA1P49639 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HOXA1P49639 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.72■□□□□ 0.59
HOXA1P49639 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC18.72■□□□□ 0.59
HOXA1P49639 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HOXA1P49639 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HOXA1P49639 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HOXA1P49639 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.71■□□□□ 0.59
HOXA1P49639 AC022413.1-201ENST00000624602 984 ntBASIC18.71■□□□□ 0.59
HOXA1P49639 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
HOXA1P49639 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC18.71■□□□□ 0.59
HOXA1P49639 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HOXA1P49639 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
HOXA1P49639 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
HOXA1P49639 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HOXA1P49639 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC18.71■□□□□ 0.59
HOXA1P49639 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
HOXA1P49639 AC004812.2-201ENST00000611079 2094 ntBASIC18.7■□□□□ 0.58
HOXA1P49639 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA1P49639 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.7■□□□□ 0.58
HOXA1P49639 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA1P49639 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA1P49639 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA1P49639 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
HOXA1P49639 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
HOXA1P49639 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC18.7■□□□□ 0.58
HOXA1P49639 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA1P49639 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA1P49639 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC18.7■□□□□ 0.58
HOXA1P49639 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC18.7■□□□□ 0.58
HOXA1P49639 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
HOXA1P49639 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA1P49639 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC18.7■□□□□ 0.58
HOXA1P49639 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA1P49639 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA1P49639 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
HOXA1P49639 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA1P49639 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA1P49639 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA1P49639 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA1P49639 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA1P49639 CEP120-209ENST00000515110 606 ntTSL 3 BASIC18.69■□□□□ 0.58
HOXA1P49639 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA1P49639 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA1P49639 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA1P49639 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA1P49639 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
HOXA1P49639 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
HOXA1P49639 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA1P49639 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA1P49639 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA1P49639 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA1P49639 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC18.68■□□□□ 0.58
HOXA1P49639 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.68■□□□□ 0.58
HOXA1P49639 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC18.68■□□□□ 0.58
HOXA1P49639 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
HOXA1P49639 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC18.68■□□□□ 0.58
HOXA1P49639 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA1P49639 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
HOXA1P49639 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HOXA1P49639 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA1P49639 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXA1P49639 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms