Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SCN1AP35498 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
SCN1AP35498 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SCN1AP35498 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SCN1AP35498 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
SCN1AP35498 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
SCN1AP35498 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
SCN1AP35498 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
SCN1AP35498 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
SCN1AP35498 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
SCN1AP35498 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
SCN1AP35498 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SCN1AP35498 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
SCN1AP35498 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC24.46■■□□□ 1.51
SCN1AP35498 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
SCN1AP35498 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
SCN1AP35498 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC24.46■■□□□ 1.51
SCN1AP35498 AL161729.1-201ENST00000604104 1402 ntBASIC24.46■■□□□ 1.51
SCN1AP35498 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SCN1AP35498 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SCN1AP35498 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SCN1AP35498 AC110285.6-201ENST00000617652 491 ntBASIC24.45■■□□□ 1.51
SCN1AP35498 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
SCN1AP35498 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
SCN1AP35498 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
SCN1AP35498 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
SCN1AP35498 SHD-204ENST00000599689 1729 ntTSL 5 BASIC24.45■■□□□ 1.5
SCN1AP35498 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC24.45■■□□□ 1.5
SCN1AP35498 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
SCN1AP35498 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
SCN1AP35498 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
SCN1AP35498 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
SCN1AP35498 AC141586.4-201ENST00000624558 1573 ntBASIC24.45■■□□□ 1.5
SCN1AP35498 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC24.44■■□□□ 1.5
SCN1AP35498 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SCN1AP35498 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SCN1AP35498 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SCN1AP35498 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
SCN1AP35498 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
SCN1AP35498 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
SCN1AP35498 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
SCN1AP35498 AC004812.2-201ENST00000611079 2094 ntBASIC24.44■■□□□ 1.5
SCN1AP35498 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC24.44■■□□□ 1.5
SCN1AP35498 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SCN1AP35498 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
SCN1AP35498 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SCN1AP35498 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SCN1AP35498 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SCN1AP35498 PEMT-206ENST00000435340 960 ntTSL 5 BASIC24.43■■□□□ 1.5
SCN1AP35498 ALDH1A3-203ENST00000557963 1670 ntBASIC24.42■■□□□ 1.5
SCN1AP35498 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC24.42■■□□□ 1.5
SCN1AP35498 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC24.42■■□□□ 1.5
SCN1AP35498 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
SCN1AP35498 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
SCN1AP35498 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SCN1AP35498 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC24.42■■□□□ 1.5
SCN1AP35498 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SCN1AP35498 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
SCN1AP35498 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SCN1AP35498 NKILA-201ENST00000613231 537 ntTSL 4 BASIC24.41■■□□□ 1.5
SCN1AP35498 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SCN1AP35498 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC24.4■■□□□ 1.5
SCN1AP35498 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
SCN1AP35498 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
SCN1AP35498 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC24.4■■□□□ 1.5
SCN1AP35498 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC24.4■■□□□ 1.5
SCN1AP35498 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
SCN1AP35498 ABCB10P4-201ENST00000566803 2184 ntBASIC24.4■■□□□ 1.5
SCN1AP35498 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
SCN1AP35498 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC24.4■■□□□ 1.5
SCN1AP35498 C17orf82-201ENST00000623772 1530 ntBASIC24.4■■□□□ 1.5
SCN1AP35498 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC24.4■■□□□ 1.5
SCN1AP35498 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC24.4■■□□□ 1.5
SCN1AP35498 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.5
SCN1AP35498 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC24.39■■□□□ 1.5
SCN1AP35498 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
SCN1AP35498 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.49
SCN1AP35498 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.49
SCN1AP35498 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
SCN1AP35498 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC24.39■■□□□ 1.49
SCN1AP35498 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SCN1AP35498 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SCN1AP35498 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SCN1AP35498 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SCN1AP35498 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SCN1AP35498 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
SCN1AP35498 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
SCN1AP35498 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
SCN1AP35498 AC009102.2-201ENST00000606772 1639 ntBASIC24.37■■□□□ 1.49
SCN1AP35498 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SCN1AP35498 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC24.37■■□□□ 1.49
SCN1AP35498 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SCN1AP35498 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
SCN1AP35498 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC24.36■■□□□ 1.49
SCN1AP35498 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC24.36■■□□□ 1.49
SCN1AP35498 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC24.36■■□□□ 1.49
SCN1AP35498 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SCN1AP35498 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SCN1AP35498 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC24.36■■□□□ 1.49
SCN1AP35498 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms