Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CCSER1Q9C0I3 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCSER1Q9C0I3 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 AC079178.1-201ENST00000420915 656 ntBASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 MIR6752-201ENST00000618442 71 ntBASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCSER1Q9C0I3 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 KRT8P24-201ENST00000560290 1559 ntBASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 HLA-V-201ENST00000429037 534 ntBASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 AC244157.2-201ENST00000616239 1006 ntBASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 COX11-210ENST00000639671 696 ntBASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 AC011474.4-201ENST00000623523 2076 ntBASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 BANP-203ENST00000393207 2438 ntTSL 2 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 AC244394.1-201ENST00000435000 1665 ntBASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 AC041040.2-201ENST00000622926 2899 ntBASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCSER1Q9C0I3 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
CCSER1Q9C0I3 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.22
CCSER1Q9C0I3 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
CCSER1Q9C0I3 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
CCSER1Q9C0I3 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
CCSER1Q9C0I3 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.22
CCSER1Q9C0I3 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCSER1Q9C0I3 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC16.39■□□□□ 0.21
CCSER1Q9C0I3 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCSER1Q9C0I3 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCSER1Q9C0I3 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC16.39■□□□□ 0.21
CCSER1Q9C0I3 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC16.39■□□□□ 0.21
CCSER1Q9C0I3 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CCSER1Q9C0I3 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.39■□□□□ 0.21
CCSER1Q9C0I3 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms