Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 SKA2-202ENST00000437036 625 ntTSL 2 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 SERPINA7P1-201ENST00000443077 631 ntBASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 AL035414.1-201ENST00000451327 857 ntBASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 AC017007.3-201ENST00000479865 435 ntBASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 AC024681.1-201ENST00000521917 487 ntBASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 AL161670.2-201ENST00000557650 1227 ntBASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 AC244517.3-201ENST00000616254 1235 ntBASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 CU633904.3-201ENST00000624042 1029 ntBASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 AL008718.2-201ENST00000609206 1313 ntBASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAIPQ9BWF2 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 AC007686.3-201ENST00000619017 3487 ntBASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 KLF2P1-201ENST00000447438 1042 ntBASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 AC009779.1-201ENST00000551138 283 ntBASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 AC009884.2-201ENST00000603110 324 ntBASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 AC097724.1-201ENST00000609581 426 ntBASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 FAM90A7P-201ENST00000382628 1395 ntBASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 FAM90A23P-201ENST00000400136 1395 ntBASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
TRAIPQ9BWF2 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms