Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 BTNL10-201ENST00000595971 695 ntBASIC13.21□□□□□ -0.29
CLRN1P58418 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC13.21□□□□□ -0.29
CLRN1P58418 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.21□□□□□ -0.29
CLRN1P58418 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC13.21□□□□□ -0.29
CLRN1P58418 AC117489.1-201ENST00000625169 3217 ntBASIC13.21□□□□□ -0.29
CLRN1P58418 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
CLRN1P58418 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
CLRN1P58418 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.21□□□□□ -0.3
CLRN1P58418 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
CLRN1P58418 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CLRN1P58418 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CLRN1P58418 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CLRN1P58418 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC13.21□□□□□ -0.3
CLRN1P58418 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
CLRN1P58418 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
CLRN1P58418 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CLRN1P58418 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.21□□□□□ -0.3
CLRN1P58418 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CLRN1P58418 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.21□□□□□ -0.3
CLRN1P58418 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.2□□□□□ -0.3
CLRN1P58418 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.2□□□□□ -0.3
CLRN1P58418 AL354989.2-201ENST00000435838 1540 ntBASIC13.2□□□□□ -0.3
CLRN1P58418 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
CLRN1P58418 AC092933.1-201ENST00000393644 945 ntBASIC13.2□□□□□ -0.3
CLRN1P58418 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.2□□□□□ -0.3
CLRN1P58418 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC13.2□□□□□ -0.3
CLRN1P58418 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC13.2□□□□□ -0.3
CLRN1P58418 AL590640.2-201ENST00000457038 527 ntBASIC13.2□□□□□ -0.3
CLRN1P58418 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC13.2□□□□□ -0.3
CLRN1P58418 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC13.2□□□□□ -0.3
CLRN1P58418 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.2□□□□□ -0.3
CLRN1P58418 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC13.2□□□□□ -0.3
CLRN1P58418 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC13.2□□□□□ -0.3
CLRN1P58418 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC13.2□□□□□ -0.3
CLRN1P58418 IGHV3-72-202ENST00000621503 303 ntBASIC13.2□□□□□ -0.3
CLRN1P58418 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC13.2□□□□□ -0.3
CLRN1P58418 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC13.2□□□□□ -0.3
CLRN1P58418 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
CLRN1P58418 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC13.2□□□□□ -0.3
CLRN1P58418 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.2□□□□□ -0.3
CLRN1P58418 ANKRD30BP2-201ENST00000435744 1610 ntBASIC13.2□□□□□ -0.3
CLRN1P58418 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
CLRN1P58418 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
CLRN1P58418 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.2□□□□□ -0.3
CLRN1P58418 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.2□□□□□ -0.3
CLRN1P58418 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CLRN1P58418 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
CLRN1P58418 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.19□□□□□ -0.3
CLRN1P58418 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 LINC01230-201ENST00000625222 3017 ntBASIC13.19□□□□□ -0.3
CLRN1P58418 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
CLRN1P58418 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLRN1P58418 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.19□□□□□ -0.3
CLRN1P58418 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms