Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC17.36■□□□□ 0.37
HMGB1P09429 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGB1P09429 SKA2-202ENST00000437036 625 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGB1P09429 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGB1P09429 CTBP2P5-201ENST00000454986 1264 ntBASIC17.36■□□□□ 0.37
HMGB1P09429 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.36■□□□□ 0.37
HMGB1P09429 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC17.36■□□□□ 0.37
HMGB1P09429 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.36■□□□□ 0.37
HMGB1P09429 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGB1P09429 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGB1P09429 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
HMGB1P09429 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
HMGB1P09429 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HMGB1P09429 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGB1P09429 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGB1P09429 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
HMGB1P09429 AC012617.1-204ENST00000586340 2305 ntBASIC17.36■□□□□ 0.37
HMGB1P09429 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
HMGB1P09429 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGB1P09429 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGB1P09429 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
HMGB1P09429 RDX-218ENST00000544551 4117 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGB1P09429 R3HDM2P2-201ENST00000401880 2116 ntBASIC17.35■□□□□ 0.37
HMGB1P09429 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
HMGB1P09429 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.35■□□□□ 0.37
HMGB1P09429 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGB1P09429 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.35■□□□□ 0.37
HMGB1P09429 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGB1P09429 AC026954.1-201ENST00000429771 1293 ntBASIC17.35■□□□□ 0.37
HMGB1P09429 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC17.35■□□□□ 0.37
HMGB1P09429 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.35■□□□□ 0.37
HMGB1P09429 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC17.35■□□□□ 0.37
HMGB1P09429 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
HMGB1P09429 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC17.35■□□□□ 0.37
HMGB1P09429 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HMGB1P09429 AC063926.2-201ENST00000623766 1308 ntBASIC17.35■□□□□ 0.37
HMGB1P09429 AC064801.2-201ENST00000625052 1303 ntBASIC17.35■□□□□ 0.37
HMGB1P09429 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 HARS-202ENST00000415192 1401 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGB1P09429 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
HMGB1P09429 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC17.35■□□□□ 0.37
HMGB1P09429 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC17.35■□□□□ 0.37
HMGB1P09429 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
HMGB1P09429 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB1P09429 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
HMGB1P09429 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
HMGB1P09429 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB1P09429 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB1P09429 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC17.34■□□□□ 0.37
HMGB1P09429 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
HMGB1P09429 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB1P09429 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB1P09429 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB1P09429 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HMGB1P09429 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB1P09429 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC17.34■□□□□ 0.37
HMGB1P09429 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB1P09429 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC17.34■□□□□ 0.37
HMGB1P09429 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
HMGB1P09429 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC17.34■□□□□ 0.37
HMGB1P09429 U91328.1-201ENST00000437528 223 ntBASIC17.34■□□□□ 0.37
HMGB1P09429 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB1P09429 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.34■□□□□ 0.37
HMGB1P09429 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB1P09429 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB1P09429 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC17.34■□□□□ 0.37
HMGB1P09429 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC17.34■□□□□ 0.37
HMGB1P09429 AC005586.2-201ENST00000563946 837 ntBASIC17.34■□□□□ 0.37
HMGB1P09429 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.34■□□□□ 0.37
HMGB1P09429 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB1P09429 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HMGB1P09429 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB1P09429 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms