Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 AC020931.1-201ENST00000589622 1346 ntBASIC21.43■■□□□ 1.02
RAPGEF3O95398 RNF165-205ENST00000588679 2904 ntBASIC21.43■■□□□ 1.02
RAPGEF3O95398 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RAPGEF3O95398 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC21.43■■□□□ 1.02
RAPGEF3O95398 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
RAPGEF3O95398 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
RAPGEF3O95398 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
RAPGEF3O95398 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.43■■□□□ 1.02
RAPGEF3O95398 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
RAPGEF3O95398 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RAPGEF3O95398 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
RAPGEF3O95398 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
RAPGEF3O95398 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC21.42■■□□□ 1.02
RAPGEF3O95398 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC21.42■■□□□ 1.02
RAPGEF3O95398 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
RAPGEF3O95398 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RAPGEF3O95398 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RAPGEF3O95398 RHOC-205ENST00000369636 786 ntTSL 2 BASIC21.42■■□□□ 1.02
RAPGEF3O95398 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
RAPGEF3O95398 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC21.42■■□□□ 1.02
RAPGEF3O95398 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RAPGEF3O95398 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RAPGEF3O95398 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC21.42■■□□□ 1.02
RAPGEF3O95398 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC21.42■■□□□ 1.02
RAPGEF3O95398 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RAPGEF3O95398 AC011431.1-201ENST00000512971 230 ntBASIC21.42■■□□□ 1.02
RAPGEF3O95398 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RAPGEF3O95398 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC21.42■■□□□ 1.02
RAPGEF3O95398 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC21.42■■□□□ 1.02
RAPGEF3O95398 AC126365.1-201ENST00000578585 1514 ntBASIC21.42■■□□□ 1.02
RAPGEF3O95398 AC005777.1-201ENST00000588332 187 ntBASIC21.42■■□□□ 1.02
RAPGEF3O95398 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC21.42■■□□□ 1.02
RAPGEF3O95398 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC21.42■■□□□ 1.02
RAPGEF3O95398 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC21.42■■□□□ 1.02
RAPGEF3O95398 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RAPGEF3O95398 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC21.42■■□□□ 1.02
RAPGEF3O95398 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
RAPGEF3O95398 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
RAPGEF3O95398 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RAPGEF3O95398 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RAPGEF3O95398 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RAPGEF3O95398 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RAPGEF3O95398 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RAPGEF3O95398 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC21.42■■□□□ 1.02
RAPGEF3O95398 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
RAPGEF3O95398 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RAPGEF3O95398 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
RAPGEF3O95398 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RAPGEF3O95398 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 LINC00115-201ENST00000473798 1317 ntBASIC21.41■■□□□ 1.02
RAPGEF3O95398 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RAPGEF3O95398 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 TREX1-203ENST00000456089 629 ntTSL 3 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 DPY19L2P4-201ENST00000479881 442 ntBASIC21.41■■□□□ 1.02
RAPGEF3O95398 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RAPGEF3O95398 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC21.41■■□□□ 1.02
RAPGEF3O95398 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RAPGEF3O95398 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RAPGEF3O95398 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RAPGEF3O95398 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RAPGEF3O95398 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RAPGEF3O95398 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
RAPGEF3O95398 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
RAPGEF3O95398 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RAPGEF3O95398 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC21.41■■□□□ 1.02
RAPGEF3O95398 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RAPGEF3O95398 CCT8L1P-201ENST00000465400 1674 ntBASIC21.4■■□□□ 1.02
RAPGEF3O95398 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
RAPGEF3O95398 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC21.4■■□□□ 1.02
RAPGEF3O95398 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RAPGEF3O95398 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RAPGEF3O95398 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
RAPGEF3O95398 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RAPGEF3O95398 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RAPGEF3O95398 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RAPGEF3O95398 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
RAPGEF3O95398 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
RAPGEF3O95398 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RAPGEF3O95398 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC21.4■■□□□ 1.02
RAPGEF3O95398 ZNF877P-201ENST00000437614 612 ntBASIC21.4■■□□□ 1.02
RAPGEF3O95398 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC21.4■■□□□ 1.02
RAPGEF3O95398 TPT1P6-201ENST00000458298 514 ntBASIC21.4■■□□□ 1.02
RAPGEF3O95398 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC21.4■■□□□ 1.02
RAPGEF3O95398 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC21.4■■□□□ 1.02
RAPGEF3O95398 AC093300.1-201ENST00000510368 1201 ntBASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms