Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC12.62□□□□□ -0.39
SDCBPO00560 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
SDCBPO00560 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
SDCBPO00560 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC12.62□□□□□ -0.39
SDCBPO00560 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
SDCBPO00560 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
SDCBPO00560 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SDCBPO00560 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC12.61□□□□□ -0.39
SDCBPO00560 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
SDCBPO00560 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
SDCBPO00560 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
SDCBPO00560 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
SDCBPO00560 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 AC090505.1-201ENST00000430515 1834 ntBASIC12.61□□□□□ -0.39
SDCBPO00560 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
SDCBPO00560 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
SDCBPO00560 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC12.61□□□□□ -0.39
SDCBPO00560 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC12.61□□□□□ -0.39
SDCBPO00560 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC12.61□□□□□ -0.39
SDCBPO00560 RHOA-206ENST00000454011 889 ntTSL 2 BASIC12.61□□□□□ -0.39
SDCBPO00560 VDAC1P7-201ENST00000462417 847 ntBASIC12.61□□□□□ -0.39
SDCBPO00560 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 AC104596.2-201ENST00000512793 793 ntBASIC12.61□□□□□ -0.39
SDCBPO00560 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC12.61□□□□□ -0.39
SDCBPO00560 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC12.61□□□□□ -0.39
SDCBPO00560 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC12.61□□□□□ -0.39
SDCBPO00560 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC12.61□□□□□ -0.39
SDCBPO00560 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC12.61□□□□□ -0.39
SDCBPO00560 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC12.61□□□□□ -0.39
SDCBPO00560 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC12.61□□□□□ -0.39
SDCBPO00560 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 AC107373.2-201ENST00000607735 490 ntBASIC12.61□□□□□ -0.39
SDCBPO00560 AC009118.2-201ENST00000613275 655 ntBASIC12.61□□□□□ -0.39
SDCBPO00560 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC12.61□□□□□ -0.39
SDCBPO00560 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
SDCBPO00560 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC12.61□□□□□ -0.39
SDCBPO00560 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 INE2-201ENST00000630399 1874 ntBASIC12.61□□□□□ -0.39
SDCBPO00560 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
SDCBPO00560 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC12.61□□□□□ -0.39
SDCBPO00560 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
SDCBPO00560 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC12.6□□□□□ -0.39
SDCBPO00560 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
SDCBPO00560 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC12.6□□□□□ -0.39
SDCBPO00560 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC12.6□□□□□ -0.39
SDCBPO00560 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC12.6□□□□□ -0.39
SDCBPO00560 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC12.6□□□□□ -0.39
SDCBPO00560 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
SDCBPO00560 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SDCBPO00560 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
SDCBPO00560 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
SDCBPO00560 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
SDCBPO00560 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC12.6□□□□□ -0.39
SDCBPO00560 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms