Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 AC069120.2-201ENST00000524091 540 ntBASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 AC004449.1-201ENST00000564240 433 ntBASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 COQ4-205ENST00000609948 956 ntTSL 2 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 Z92544.3-201ENST00000624747 417 ntBASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 RAB34-223ENST00000636154 730 ntTSL 2 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 RTL10-202ENST00000405640 6785 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 TBX3-201ENST00000257566 4208 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 EOGT-202ENST00000383701 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 TLR6-202ENST00000436693 5880 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHMP1AQ9HD42 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 PPT1-213ENST00000641319 2388 ntBASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 AMER3-202ENST00000423981 6172 ntAPPRIS P1 TSL 4 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 SMAD2-203ENST00000402690 12075 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 LPCAT2-201ENST00000262134 5391 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 ITSN1-208ENST00000399349 5191 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 HNRNPA3P1-201ENST00000401429 1139 ntBASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 HNRNPA3P5-201ENST00000455201 833 ntBASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 NSD2-206ENST00000382895 7827 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 ADCY7-202ENST00000394697 6213 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CHMP1AQ9HD42 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms