Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC16.33■□□□□ 0.2
HPS3Q969F9 MST1P2-201ENST00000457982 2291 ntBASIC16.33■□□□□ 0.2
HPS3Q969F9 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HPS3Q969F9 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HPS3Q969F9 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HPS3Q969F9 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 OR2I1P-210ENST00000642037 4691 ntBASIC16.32■□□□□ 0.2
HPS3Q969F9 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HPS3Q969F9 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC16.32■□□□□ 0.2
HPS3Q969F9 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
HPS3Q969F9 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HPS3Q969F9 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.32■□□□□ 0.2
HPS3Q969F9 CHMP1AP1-201ENST00000445563 662 ntBASIC16.32■□□□□ 0.2
HPS3Q969F9 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
HPS3Q969F9 KLF2P4-201ENST00000451959 1225 ntBASIC16.32■□□□□ 0.2
HPS3Q969F9 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC16.32■□□□□ 0.2
HPS3Q969F9 AC119751.2-201ENST00000504529 210 ntBASIC16.32■□□□□ 0.2
HPS3Q969F9 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC16.32■□□□□ 0.2
HPS3Q969F9 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC16.32■□□□□ 0.2
HPS3Q969F9 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC16.32■□□□□ 0.2
HPS3Q969F9 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC16.32■□□□□ 0.2
HPS3Q969F9 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16.32■□□□□ 0.2
HPS3Q969F9 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC16.32■□□□□ 0.2
HPS3Q969F9 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC16.32■□□□□ 0.2
HPS3Q969F9 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
HPS3Q969F9 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
HPS3Q969F9 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC16.32■□□□□ 0.2
HPS3Q969F9 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HPS3Q969F9 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
HPS3Q969F9 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC16.31■□□□□ 0.2
HPS3Q969F9 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HPS3Q969F9 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC16.31■□□□□ 0.2
HPS3Q969F9 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
HPS3Q969F9 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC16.31■□□□□ 0.2
HPS3Q969F9 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC16.31■□□□□ 0.2
HPS3Q969F9 KRT8P28-201ENST00000433288 1390 ntBASIC16.31■□□□□ 0.2
HPS3Q969F9 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HPS3Q969F9 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
HPS3Q969F9 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 GZMB-202ENST00000382540 816 ntTSL 5 BASIC16.31■□□□□ 0.2
HPS3Q969F9 MPV17-206ENST00000402722 827 ntTSL 3 BASIC16.31■□□□□ 0.2
HPS3Q969F9 CNN2P10-201ENST00000443067 918 ntBASIC16.31■□□□□ 0.2
HPS3Q969F9 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC16.31■□□□□ 0.2
HPS3Q969F9 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC16.31■□□□□ 0.2
HPS3Q969F9 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HPS3Q969F9 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC16.31■□□□□ 0.2
HPS3Q969F9 MIR4259-201ENST00000584466 101 ntBASIC16.31■□□□□ 0.2
HPS3Q969F9 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 WARS-203ENST00000358655 2466 ntTSL 2 BASIC16.31■□□□□ 0.2
HPS3Q969F9 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC16.31■□□□□ 0.2
HPS3Q969F9 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HPS3Q969F9 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 R3HDM2P2-201ENST00000401880 2116 ntBASIC16.31■□□□□ 0.2
HPS3Q969F9 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.31■□□□□ 0.2
HPS3Q969F9 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HPS3Q969F9 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HPS3Q969F9 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms