Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 LDHBP1-201ENST00000455730 1119 ntBASIC4.61□□□□□ -1.67
SYNE1Q8NF91 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 COX5BP1-201ENST00000507622 393 ntBASIC4.61□□□□□ -1.67
SYNE1Q8NF91 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 POMT1-203ENST00000372228 3123 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 IP6K1-201ENST00000321599 4456 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 RGS5-214ENST00000429865 754 ntTSL 3 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 FTLP10-202ENST00000505798 471 ntBASIC4.61□□□□□ -1.67
SYNE1Q8NF91 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 INE2-201ENST00000630399 1874 ntBASIC4.61□□□□□ -1.67
SYNE1Q8NF91 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 PCDHB2-201ENST00000194155 4126 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 AC144522.1-201ENST00000625111 1658 ntBASIC4.61□□□□□ -1.67
SYNE1Q8NF91 PCNX4-202ENST00000391611 4073 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 MICAL1-208ENST00000630715 3678 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 LINC02447-202ENST00000501888 2146 ntBASIC4.61□□□□□ -1.67
SYNE1Q8NF91 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 RERG-205ENST00000537647 935 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 AC023310.1-201ENST00000554836 735 ntBASIC4.61□□□□□ -1.67
SYNE1Q8NF91 RN7SL713P-201ENST00000582127 302 ntBASIC4.61□□□□□ -1.67
SYNE1Q8NF91 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 AC128714.1-201ENST00000637035 887 ntBASIC4.61□□□□□ -1.67
SYNE1Q8NF91 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 TTC17-202ENST00000299240 3648 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 TCF3-202ENST00000344749 4289 ntTSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 SYDE1-203ENST00000600252 3832 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 POLR3E-219ENST00000615879 3655 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 TNRC18P2-201ENST00000417666 2714 ntBASIC4.61□□□□□ -1.67
SYNE1Q8NF91 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 AHRR-211ENST00000515206 462 ntTSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 NDUFV2P1-201ENST00000596415 907 ntBASIC4.61□□□□□ -1.67
SYNE1Q8NF91 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 IFNAR2-205ENST00000404220 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 MARCH3-201ENST00000308660 4196 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 AL596087.1-201ENST00000400979 1969 ntBASIC4.61□□□□□ -1.67
SYNE1Q8NF91 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms