Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL4A5P29400 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
COL4A5P29400 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC17.11■□□□□ 0.33
COL4A5P29400 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL4A5P29400 ASS1P2-201ENST00000439895 1223 ntBASIC17.11■□□□□ 0.33
COL4A5P29400 GALP-202ENST00000440823 889 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A5P29400 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC17.11■□□□□ 0.33
COL4A5P29400 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC17.11■□□□□ 0.33
COL4A5P29400 HNRNPA1P5-201ENST00000558213 966 ntBASIC17.11■□□□□ 0.33
COL4A5P29400 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A5P29400 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A5P29400 ESR1-214ENST00000638569 132 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A5P29400 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
COL4A5P29400 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
COL4A5P29400 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC17.11■□□□□ 0.33
COL4A5P29400 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.11■□□□□ 0.33
COL4A5P29400 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
COL4A5P29400 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL4A5P29400 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC17.11■□□□□ 0.33
COL4A5P29400 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A5P29400 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A5P29400 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC17.1■□□□□ 0.33
COL4A5P29400 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC17.1■□□□□ 0.33
COL4A5P29400 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC17.1■□□□□ 0.33
COL4A5P29400 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC17.1■□□□□ 0.33
COL4A5P29400 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A5P29400 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A5P29400 AC025594.1-201ENST00000469533 543 ntBASIC17.1■□□□□ 0.33
COL4A5P29400 BCRP4-201ENST00000506079 804 ntBASIC17.1■□□□□ 0.33
COL4A5P29400 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A5P29400 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC17.1■□□□□ 0.33
COL4A5P29400 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
COL4A5P29400 AC011462.4-201ENST00000616866 449 ntBASIC17.1■□□□□ 0.33
COL4A5P29400 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A5P29400 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A5P29400 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A5P29400 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A5P29400 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
COL4A5P29400 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A5P29400 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A5P29400 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A5P29400 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A5P29400 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A5P29400 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A5P29400 AMT-256ENST00000638063 1783 ntTSL 5 BASIC17.1■□□□□ 0.33
COL4A5P29400 AC018529.2-202ENST00000611482 3087 ntBASIC17.1■□□□□ 0.33
COL4A5P29400 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A5P29400 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A5P29400 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
COL4A5P29400 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC17.1■□□□□ 0.33
COL4A5P29400 AC136604.1-202ENST00000425471 771 ntBASIC17.1■□□□□ 0.33
COL4A5P29400 KRT18P62-201ENST00000446618 1287 ntBASIC17.1■□□□□ 0.33
COL4A5P29400 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC17.1■□□□□ 0.33
COL4A5P29400 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A5P29400 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
COL4A5P29400 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
COL4A5P29400 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A5P29400 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A5P29400 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A5P29400 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL4A5P29400 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A5P29400 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
COL4A5P29400 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
COL4A5P29400 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC17.09■□□□□ 0.33
COL4A5P29400 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A5P29400 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 AC015909.5-201ENST00000624336 2266 ntBASIC17.09■□□□□ 0.33
COL4A5P29400 PARN-202ENST00000420015 2360 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A5P29400 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A5P29400 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms