Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC12.56□□□□□ -0.4
USF1P22415 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC12.56□□□□□ -0.4
USF1P22415 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
USF1P22415 SPTLC1P5-201ENST00000450718 252 ntBASIC12.56□□□□□ -0.4
USF1P22415 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC12.56□□□□□ -0.4
USF1P22415 TUBB8P8-201ENST00000458717 1058 ntBASIC12.56□□□□□ -0.4
USF1P22415 OARD1-204ENST00000464633 717 ntTSL 2 BASIC12.56□□□□□ -0.4
USF1P22415 RN7SL11P-201ENST00000471305 293 ntBASIC12.56□□□□□ -0.4
USF1P22415 TSACC-208ENST00000481479 741 ntTSL 2 BASIC12.56□□□□□ -0.4
USF1P22415 RN7SL720P-201ENST00000488178 304 ntBASIC12.56□□□□□ -0.4
USF1P22415 MESTP3-201ENST00000503460 968 ntBASIC12.56□□□□□ -0.4
USF1P22415 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
USF1P22415 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC12.56□□□□□ -0.4
USF1P22415 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC12.56□□□□□ -0.4
USF1P22415 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
USF1P22415 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC12.56□□□□□ -0.4
USF1P22415 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC12.56□□□□□ -0.4
USF1P22415 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
USF1P22415 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC12.56□□□□□ -0.4
USF1P22415 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC12.56□□□□□ -0.4
USF1P22415 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 FKBP4P6-201ENST00000457486 1332 ntBASIC12.56□□□□□ -0.4
USF1P22415 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
USF1P22415 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
USF1P22415 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
USF1P22415 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC12.56□□□□□ -0.4
USF1P22415 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC12.55□□□□□ -0.4
USF1P22415 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC12.55□□□□□ -0.4
USF1P22415 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
USF1P22415 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC12.55□□□□□ -0.4
USF1P22415 LINC01101-201ENST00000622953 1884 ntBASIC12.55□□□□□ -0.4
USF1P22415 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC12.55□□□□□ -0.4
USF1P22415 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC12.55□□□□□ -0.4
USF1P22415 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
USF1P22415 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC12.55□□□□□ -0.4
USF1P22415 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC12.55□□□□□ -0.4
USF1P22415 ZBTB45P1-201ENST00000452761 1456 ntBASIC12.55□□□□□ -0.4
USF1P22415 KRT8P19-201ENST00000551916 1455 ntBASIC12.55□□□□□ -0.4
USF1P22415 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
USF1P22415 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
USF1P22415 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
USF1P22415 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC12.55□□□□□ -0.4
USF1P22415 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC12.55□□□□□ -0.4
USF1P22415 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
USF1P22415 CRCP-204ENST00000398684 492 ntTSL 2 BASIC12.55□□□□□ -0.4
USF1P22415 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC12.55□□□□□ -0.4
USF1P22415 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC12.55□□□□□ -0.4
USF1P22415 AP003171.2-201ENST00000528208 925 ntBASIC12.55□□□□□ -0.4
USF1P22415 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
USF1P22415 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC12.55□□□□□ -0.4
USF1P22415 DUX4L47-201ENST00000566374 394 ntBASIC12.55□□□□□ -0.4
USF1P22415 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC12.55□□□□□ -0.4
USF1P22415 RN7SL163P-201ENST00000583100 276 ntBASIC12.55□□□□□ -0.4
USF1P22415 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC12.55□□□□□ -0.4
USF1P22415 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC12.55□□□□□ -0.4
USF1P22415 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC12.55□□□□□ -0.4
USF1P22415 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC12.55□□□□□ -0.4
USF1P22415 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC12.55□□□□□ -0.4
USF1P22415 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC12.55□□□□□ -0.4
USF1P22415 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
USF1P22415 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC12.55□□□□□ -0.4
USF1P22415 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms