Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 APRT-202ENST00000426324 664 ntTSL 2 BASIC14.75□□□□□ -0.05
COL6A3P12111 AC092865.2-201ENST00000439409 971 ntBASIC14.75□□□□□ -0.05
COL6A3P12111 RN7SL148P-201ENST00000467120 279 ntBASIC14.75□□□□□ -0.05
COL6A3P12111 AP002852.2-202ENST00000523572 592 ntTSL 4 BASIC14.75□□□□□ -0.05
COL6A3P12111 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC14.75□□□□□ -0.05
COL6A3P12111 Metazoa_SRP.147-201ENST00000576563 312 ntBASIC14.75□□□□□ -0.05
COL6A3P12111 AC010776.3-201ENST00000617349 424 ntBASIC14.75□□□□□ -0.05
COL6A3P12111 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 OR2C1-201ENST00000304936 1406 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
COL6A3P12111 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC14.75□□□□□ -0.05
COL6A3P12111 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC14.75□□□□□ -0.05
COL6A3P12111 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
COL6A3P12111 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 IL6RP1-201ENST00000417848 1273 ntBASIC14.75□□□□□ -0.05
COL6A3P12111 PRDX2P3-201ENST00000515779 586 ntBASIC14.75□□□□□ -0.05
COL6A3P12111 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC14.75□□□□□ -0.05
COL6A3P12111 SNX20-205ENST00000610485 557 ntTSL 5 BASIC14.75□□□□□ -0.05
COL6A3P12111 LINC01615-203ENST00000634877 673 ntTSL 5 BASIC14.75□□□□□ -0.05
COL6A3P12111 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 DEGS1-202ENST00000391877 1345 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
COL6A3P12111 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC14.75□□□□□ -0.05
COL6A3P12111 SFPQP1-201ENST00000446621 1786 ntBASIC14.75□□□□□ -0.05
COL6A3P12111 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC14.75□□□□□ -0.05
COL6A3P12111 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 ARR3-201ENST00000307959 1292 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.75□□□□□ -0.05
COL6A3P12111 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
COL6A3P12111 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
COL6A3P12111 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
COL6A3P12111 METTL5-203ENST00000392640 800 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
COL6A3P12111 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 KRT8P18-201ENST00000413425 1445 ntBASIC14.75□□□□□ -0.05
COL6A3P12111 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
COL6A3P12111 KRT8P38-201ENST00000441370 1430 ntBASIC14.75□□□□□ -0.05
COL6A3P12111 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 AC007622.1-201ENST00000488371 535 ntBASIC14.75□□□□□ -0.05
COL6A3P12111 AC105250.1-201ENST00000509378 2057 ntBASIC14.75□□□□□ -0.05
COL6A3P12111 AP000439.2-201ENST00000542064 726 ntTSL 2 BASIC14.75□□□□□ -0.05
COL6A3P12111 PXN-AS1-205ENST00000542314 707 ntTSL 2 BASIC14.75□□□□□ -0.05
COL6A3P12111 AL359219.1-201ENST00000556311 934 ntBASIC14.75□□□□□ -0.05
COL6A3P12111 RN7SL832P-201ENST00000607781 1756 ntBASIC14.75□□□□□ -0.05
COL6A3P12111 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
COL6A3P12111 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 CREB5-202ENST00000396298 2001 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC14.74□□□□□ -0.05
COL6A3P12111 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.74□□□□□ -0.05
COL6A3P12111 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC14.74□□□□□ -0.05
COL6A3P12111 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
COL6A3P12111 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 AC015813.5-201ENST00000624641 1514 ntBASIC14.74□□□□□ -0.05
COL6A3P12111 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.74□□□□□ -0.05
COL6A3P12111 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC14.74□□□□□ -0.05
COL6A3P12111 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC14.74□□□□□ -0.05
COL6A3P12111 PIGA-209ENST00000634582 965 ntTSL 2 BASIC14.74□□□□□ -0.05
COL6A3P12111 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
COL6A3P12111 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC14.74□□□□□ -0.05
COL6A3P12111 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 Z84721.1-201ENST00000438841 372 ntBASIC14.74□□□□□ -0.05
COL6A3P12111 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
COL6A3P12111 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC14.74□□□□□ -0.05
COL6A3P12111 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
COL6A3P12111 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
COL6A3P12111 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL6A3P12111 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.73□□□□□ -0.05
COL6A3P12111 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.73□□□□□ -0.05
COL6A3P12111 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL6A3P12111 SSR4-202ENST00000370085 526 ntTSL 2 BASIC14.73□□□□□ -0.05
COL6A3P12111 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC14.73□□□□□ -0.05
COL6A3P12111 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC14.73□□□□□ -0.05
COL6A3P12111 RN7SL322P-201ENST00000583519 299 ntBASIC14.73□□□□□ -0.05
COL6A3P12111 AC091905.3-201ENST00000624959 234 ntBASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms