Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
COL6A2P12110 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.61□□□□□ -0.07
COL6A2P12110 HSPA8P5-201ENST00000456928 2069 ntBASIC14.61□□□□□ -0.07
COL6A2P12110 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
COL6A2P12110 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
COL6A2P12110 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
COL6A2P12110 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.61□□□□□ -0.07
COL6A2P12110 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.61□□□□□ -0.07
COL6A2P12110 AL162726.2-201ENST00000438986 1017 ntBASIC14.61□□□□□ -0.07
COL6A2P12110 AC245100.3-201ENST00000441281 285 ntBASIC14.61□□□□□ -0.07
COL6A2P12110 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 AC009486.1-201ENST00000569860 813 ntBASIC14.61□□□□□ -0.07
COL6A2P12110 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.61□□□□□ -0.07
COL6A2P12110 AC106028.4-201ENST00000614509 607 ntBASIC14.61□□□□□ -0.07
COL6A2P12110 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.61□□□□□ -0.07
COL6A2P12110 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
COL6A2P12110 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.61□□□□□ -0.07
COL6A2P12110 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.61□□□□□ -0.07
COL6A2P12110 AC090643.2-201ENST00000623442 2029 ntBASIC14.61□□□□□ -0.07
COL6A2P12110 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
COL6A2P12110 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.61□□□□□ -0.07
COL6A2P12110 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
COL6A2P12110 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 CICP16-201ENST00000502609 2813 ntBASIC14.61□□□□□ -0.07
COL6A2P12110 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.61□□□□□ -0.07
COL6A2P12110 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.6□□□□□ -0.07
COL6A2P12110 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.6□□□□□ -0.07
COL6A2P12110 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
COL6A2P12110 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.6□□□□□ -0.07
COL6A2P12110 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
COL6A2P12110 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
COL6A2P12110 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.6□□□□□ -0.07
COL6A2P12110 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
COL6A2P12110 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.6□□□□□ -0.07
COL6A2P12110 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.6□□□□□ -0.07
COL6A2P12110 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 PMS2P2-201ENST00000425039 1128 ntBASIC14.6□□□□□ -0.07
COL6A2P12110 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.6□□□□□ -0.07
COL6A2P12110 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
COL6A2P12110 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.6□□□□□ -0.07
COL6A2P12110 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.6□□□□□ -0.07
COL6A2P12110 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.6□□□□□ -0.07
COL6A2P12110 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
COL6A2P12110 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
COL6A2P12110 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.6□□□□□ -0.07
COL6A2P12110 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC14.6□□□□□ -0.07
COL6A2P12110 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.6□□□□□ -0.07
COL6A2P12110 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 PID1-202ENST00000392054 2745 ntTSL 2 BASIC14.6□□□□□ -0.07
COL6A2P12110 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.6□□□□□ -0.07
COL6A2P12110 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A2P12110 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC14.6□□□□□ -0.07
COL6A2P12110 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.6□□□□□ -0.07
COL6A2P12110 AL590440.2-201ENST00000641973 1595 ntBASIC14.6□□□□□ -0.07
COL6A2P12110 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
COL6A2P12110 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
COL6A2P12110 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC14.59□□□□□ -0.07
COL6A2P12110 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
COL6A2P12110 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.59□□□□□ -0.07
COL6A2P12110 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.59□□□□□ -0.07
COL6A2P12110 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
COL6A2P12110 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
COL6A2P12110 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A2P12110 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms