Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
LDB3O75112 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
LDB3O75112 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.19
LDB3O75112 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.89□□□□□ -0.19
LDB3O75112 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.89□□□□□ -0.19
LDB3O75112 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
LDB3O75112 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
LDB3O75112 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 AL009178.2-201ENST00000597278 2719 ntBASIC13.89□□□□□ -0.19
LDB3O75112 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.89□□□□□ -0.19
LDB3O75112 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13.89□□□□□ -0.19
LDB3O75112 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 RPS2P32-201ENST00000439199 892 ntBASIC13.89□□□□□ -0.19
LDB3O75112 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.89□□□□□ -0.19
LDB3O75112 AL583810.1-201ENST00000553344 1045 ntBASIC13.89□□□□□ -0.19
LDB3O75112 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC13.89□□□□□ -0.19
LDB3O75112 RN7SL560P-201ENST00000577943 264 ntBASIC13.89□□□□□ -0.19
LDB3O75112 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.89□□□□□ -0.19
LDB3O75112 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.89□□□□□ -0.19
LDB3O75112 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.89□□□□□ -0.19
LDB3O75112 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 SHC1P1-201ENST00000425230 1745 ntBASIC13.89□□□□□ -0.19
LDB3O75112 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.89□□□□□ -0.19
LDB3O75112 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.89□□□□□ -0.19
LDB3O75112 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
LDB3O75112 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LDB3O75112 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.89□□□□□ -0.19
LDB3O75112 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC13.89□□□□□ -0.19
LDB3O75112 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.88□□□□□ -0.19
LDB3O75112 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC13.88□□□□□ -0.19
LDB3O75112 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
LDB3O75112 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.88□□□□□ -0.19
LDB3O75112 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.88□□□□□ -0.19
LDB3O75112 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC13.88□□□□□ -0.19
LDB3O75112 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
LDB3O75112 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
LDB3O75112 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.88□□□□□ -0.19
LDB3O75112 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 AC117489.1-201ENST00000625169 3217 ntBASIC13.88□□□□□ -0.19
LDB3O75112 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.88□□□□□ -0.19
LDB3O75112 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.88□□□□□ -0.19
LDB3O75112 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
LDB3O75112 RPL13AP20-201ENST00000459725 609 ntBASIC13.88□□□□□ -0.19
LDB3O75112 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC13.88□□□□□ -0.19
LDB3O75112 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.88□□□□□ -0.19
LDB3O75112 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.88□□□□□ -0.19
LDB3O75112 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC13.88□□□□□ -0.19
LDB3O75112 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.88□□□□□ -0.19
LDB3O75112 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.88□□□□□ -0.19
LDB3O75112 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.88□□□□□ -0.19
LDB3O75112 EEF1DP1-201ENST00000585891 896 ntBASIC13.88□□□□□ -0.19
LDB3O75112 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.88□□□□□ -0.19
LDB3O75112 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC13.88□□□□□ -0.19
LDB3O75112 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
LDB3O75112 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 AC139712.1-201ENST00000378256 1875 ntBASIC13.88□□□□□ -0.19
LDB3O75112 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.88□□□□□ -0.19
LDB3O75112 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
LDB3O75112 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
LDB3O75112 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.88□□□□□ -0.19
LDB3O75112 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
LDB3O75112 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.88□□□□□ -0.19
LDB3O75112 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.88□□□□□ -0.19
LDB3O75112 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LDB3O75112 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms