Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 SCARNA21-201ENST00000517026 139 ntBASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 AC009779.1-201ENST00000551138 283 ntBASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 MIR3619-201ENST00000579667 83 ntBASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 AL805961.1-203ENST00000641078 1258 ntBASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 AC138627.1-207ENST00000641560 1006 ntBASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 AJ011931.1-201ENST00000618749 2492 ntBASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 KRT8P28-201ENST00000433288 1390 ntBASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 AC018442.1-201ENST00000421439 2061 ntBASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 TSACC-208ENST00000481479 741 ntTSL 2 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 AC006122.1-201ENST00000493323 440 ntBASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 RN7SL774P-201ENST00000577467 290 ntBASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 AL021578.1-201ENST00000613646 709 ntBASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 PCDHA3-202ENST00000532566 4594 ntBASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CLCF1Q9UBD9 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC13.09□□□□□ -0.31
CLCF1Q9UBD9 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLCF1Q9UBD9 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLCF1Q9UBD9 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC13.09□□□□□ -0.31
CLCF1Q9UBD9 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLCF1Q9UBD9 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CLCF1Q9UBD9 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLCF1Q9UBD9 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC13.09□□□□□ -0.31
CLCF1Q9UBD9 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLCF1Q9UBD9 MYO15B-237ENST00000642007 4893 ntBASIC13.09□□□□□ -0.31
CLCF1Q9UBD9 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
CLCF1Q9UBD9 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLCF1Q9UBD9 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLCF1Q9UBD9 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLCF1Q9UBD9 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLCF1Q9UBD9 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLCF1Q9UBD9 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms