Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC16.5■□□□□ 0.23
COL20A1Q9P218 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC16.5■□□□□ 0.23
COL20A1Q9P218 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC16.5■□□□□ 0.23
COL20A1Q9P218 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL20A1Q9P218 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC16.5■□□□□ 0.23
COL20A1Q9P218 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL20A1Q9P218 RN7SL190P-201ENST00000582519 257 ntBASIC16.5■□□□□ 0.23
COL20A1Q9P218 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC16.5■□□□□ 0.23
COL20A1Q9P218 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC16.5■□□□□ 0.23
COL20A1Q9P218 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC16.5■□□□□ 0.23
COL20A1Q9P218 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC16.5■□□□□ 0.23
COL20A1Q9P218 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
COL20A1Q9P218 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL20A1Q9P218 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL20A1Q9P218 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
COL20A1Q9P218 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.5■□□□□ 0.23
COL20A1Q9P218 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
COL20A1Q9P218 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC16.5■□□□□ 0.23
COL20A1Q9P218 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL20A1Q9P218 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
COL20A1Q9P218 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL20A1Q9P218 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL20A1Q9P218 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL20A1Q9P218 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL20A1Q9P218 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC16.5■□□□□ 0.23
COL20A1Q9P218 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL20A1Q9P218 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL20A1Q9P218 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL20A1Q9P218 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
COL20A1Q9P218 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL20A1Q9P218 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC16.5■□□□□ 0.23
COL20A1Q9P218 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 FGFR3P1-201ENST00000449999 601 ntBASIC16.49■□□□□ 0.23
COL20A1Q9P218 AC019193.1-201ENST00000506678 823 ntBASIC16.49■□□□□ 0.23
COL20A1Q9P218 AC022447.6-201ENST00000515522 438 ntBASIC16.49■□□□□ 0.23
COL20A1Q9P218 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL20A1Q9P218 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.49■□□□□ 0.23
COL20A1Q9P218 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 BANF1P3-201ENST00000412556 261 ntBASIC16.48■□□□□ 0.23
COL20A1Q9P218 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 AC069218.1-201ENST00000435269 762 ntBASIC16.48■□□□□ 0.23
COL20A1Q9P218 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 AL161932.2-201ENST00000435436 679 ntBASIC16.48■□□□□ 0.23
COL20A1Q9P218 MAGEA5-201ENST00000446757 942 ntBASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms