Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC16.36■□□□□ 0.21
VTA1Q9NP79 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VTA1Q9NP79 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
VTA1Q9NP79 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC16.36■□□□□ 0.21
VTA1Q9NP79 AC087392.5-201ENST00000612517 489 ntBASIC16.36■□□□□ 0.21
VTA1Q9NP79 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
VTA1Q9NP79 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC16.36■□□□□ 0.21
VTA1Q9NP79 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC16.36■□□□□ 0.21
VTA1Q9NP79 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VTA1Q9NP79 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VTA1Q9NP79 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC16.36■□□□□ 0.21
VTA1Q9NP79 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VTA1Q9NP79 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
VTA1Q9NP79 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.36■□□□□ 0.21
VTA1Q9NP79 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
VTA1Q9NP79 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VTA1Q9NP79 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VTA1Q9NP79 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 KRT17P5-201ENST00000332088 839 ntBASIC16.35■□□□□ 0.21
VTA1Q9NP79 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VTA1Q9NP79 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VTA1Q9NP79 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VTA1Q9NP79 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VTA1Q9NP79 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 KRT8P1-201ENST00000557533 1207 ntBASIC16.35■□□□□ 0.21
VTA1Q9NP79 RPL17P45-201ENST00000586289 509 ntBASIC16.35■□□□□ 0.21
VTA1Q9NP79 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VTA1Q9NP79 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VTA1Q9NP79 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VTA1Q9NP79 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VTA1Q9NP79 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VTA1Q9NP79 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VTA1Q9NP79 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VTA1Q9NP79 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
VTA1Q9NP79 AC091951.1-201ENST00000512854 2465 ntBASIC16.35■□□□□ 0.21
VTA1Q9NP79 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
VTA1Q9NP79 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
VTA1Q9NP79 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
VTA1Q9NP79 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC16.34■□□□□ 0.21
VTA1Q9NP79 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC16.34■□□□□ 0.21
VTA1Q9NP79 AC090386.2-201ENST00000623010 1039 ntBASIC16.34■□□□□ 0.21
VTA1Q9NP79 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 AC018442.1-201ENST00000421439 2061 ntBASIC16.34■□□□□ 0.21
VTA1Q9NP79 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.34■□□□□ 0.21
VTA1Q9NP79 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
VTA1Q9NP79 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.34■□□□□ 0.21
VTA1Q9NP79 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VTA1Q9NP79 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.34■□□□□ 0.21
VTA1Q9NP79 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC16.34■□□□□ 0.21
VTA1Q9NP79 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
VTA1Q9NP79 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
VTA1Q9NP79 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.33■□□□□ 0.21
VTA1Q9NP79 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VTA1Q9NP79 AGAP7P-201ENST00000582299 2062 ntBASIC16.33■□□□□ 0.21
VTA1Q9NP79 AGAP14-201ENST00000624701 2060 ntBASIC16.33■□□□□ 0.21
VTA1Q9NP79 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
VTA1Q9NP79 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
VTA1Q9NP79 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VTA1Q9NP79 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.33■□□□□ 0.2
VTA1Q9NP79 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VTA1Q9NP79 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.33■□□□□ 0.2
VTA1Q9NP79 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
VTA1Q9NP79 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms