Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 FAS-202ENST00000352159 1722 ntTSL 5 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.04
HMGB4Q8WW32 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HMGB4Q8WW32 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC14.77□□□□□ -0.04
HMGB4Q8WW32 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.77□□□□□ -0.04
HMGB4Q8WW32 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
HMGB4Q8WW32 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HMGB4Q8WW32 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.04
HMGB4Q8WW32 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HMGB4Q8WW32 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.77□□□□□ -0.04
HMGB4Q8WW32 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.77□□□□□ -0.04
HMGB4Q8WW32 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HMGB4Q8WW32 PCDHA3-202ENST00000532566 4594 ntBASIC14.77□□□□□ -0.04
HMGB4Q8WW32 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
HMGB4Q8WW32 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.77□□□□□ -0.05
HMGB4Q8WW32 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 AC079112.1-201ENST00000454972 939 ntBASIC14.77□□□□□ -0.05
HMGB4Q8WW32 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 MIR3677-201ENST00000578964 60 ntBASIC14.77□□□□□ -0.05
HMGB4Q8WW32 AC087045.2-201ENST00000606279 1003 ntBASIC14.77□□□□□ -0.05
HMGB4Q8WW32 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 AC018629.1-201ENST00000623381 1736 ntBASIC14.77□□□□□ -0.05
HMGB4Q8WW32 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB4Q8WW32 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 AL583805.1-201ENST00000391389 531 ntBASIC14.76□□□□□ -0.05
HMGB4Q8WW32 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 AC135983.4-201ENST00000564116 1262 ntBASIC14.76□□□□□ -0.05
HMGB4Q8WW32 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 LINC01165-201ENST00000445190 1623 ntBASIC14.76□□□□□ -0.05
HMGB4Q8WW32 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGB4Q8WW32 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms