Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 HADH-202ENST00000403312 1752 ntTSL 5 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 SALL4P5-201ENST00000419001 1760 ntBASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 AL022342.1-201ENST00000400363 863 ntBASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 ZNF890P-202ENST00000530367 1156 ntBASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 DUX4L47-201ENST00000566374 394 ntBASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 MIR6074-201ENST00000612054 107 ntBASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 FAM90A12P-201ENST00000519497 2375 ntBASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 FAM90A24P-201ENST00000520792 2369 ntBASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 AL136172.1-201ENST00000598590 1394 ntBASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUDCD3Q8IVD9 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 COL6A4P2-202ENST00000504443 2753 ntBASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 AL139400.1-201ENST00000366220 510 ntBASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 AC114501.2-201ENST00000439631 535 ntBASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 AL844908.2-201ENST00000609461 460 ntBASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC14.72□□□□□ -0.05
NUDCD3Q8IVD9 AC111170.3-201ENST00000624282 2464 ntBASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms