Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VCPP55072 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.86■□□□□ 0.13
VCPP55072 RN7SL774P-201ENST00000577467 290 ntBASIC15.86■□□□□ 0.13
VCPP55072 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VCPP55072 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VCPP55072 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VCPP55072 AC091544.8-201ENST00000619490 361 ntBASIC15.86■□□□□ 0.13
VCPP55072 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VCPP55072 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VCPP55072 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.86■□□□□ 0.13
VCPP55072 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCPP55072 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCPP55072 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCPP55072 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
VCPP55072 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
VCPP55072 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCPP55072 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCPP55072 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCPP55072 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCPP55072 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
VCPP55072 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
VCPP55072 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCPP55072 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
VCPP55072 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VCPP55072 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.86■□□□□ 0.13
VCPP55072 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.85■□□□□ 0.13
VCPP55072 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
VCPP55072 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.85■□□□□ 0.13
VCPP55072 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.85■□□□□ 0.13
VCPP55072 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.85■□□□□ 0.13
VCPP55072 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 MTHFR-210ENST00000641407 2387 ntBASIC15.85■□□□□ 0.13
VCPP55072 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 AC007787.1-201ENST00000588095 1583 ntBASIC15.85■□□□□ 0.13
VCPP55072 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
VCPP55072 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
VCPP55072 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC15.85■□□□□ 0.13
VCPP55072 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 KLF2P2-201ENST00000416807 1039 ntBASIC15.85■□□□□ 0.13
VCPP55072 AC007274.2-201ENST00000421675 662 ntBASIC15.85■□□□□ 0.13
VCPP55072 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.85■□□□□ 0.13
VCPP55072 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC15.85■□□□□ 0.13
VCPP55072 MSRA-203ENST00000441698 788 ntTSL 2 BASIC15.85■□□□□ 0.13
VCPP55072 CNN2P10-201ENST00000443067 918 ntBASIC15.85■□□□□ 0.13
VCPP55072 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC15.85■□□□□ 0.13
VCPP55072 SERPINA13P-202ENST00000478994 924 ntBASIC15.85■□□□□ 0.13
VCPP55072 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.85■□□□□ 0.13
VCPP55072 LY6E-208ENST00000520531 490 ntTSL 2 BASIC15.85■□□□□ 0.13
VCPP55072 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC15.85■□□□□ 0.13
VCPP55072 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.85■□□□□ 0.13
VCPP55072 RN7SL736P-201ENST00000613111 269 ntBASIC15.85■□□□□ 0.13
VCPP55072 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.85■□□□□ 0.13
VCPP55072 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 AC008132.1-202ENST00000342005 1389 ntBASIC15.85■□□□□ 0.13
VCPP55072 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.85■□□□□ 0.13
VCPP55072 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCPP55072 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.85■□□□□ 0.13
VCPP55072 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.85■□□□□ 0.13
VCPP55072 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC15.85■□□□□ 0.13
VCPP55072 AC018529.2-202ENST00000611482 3087 ntBASIC15.84■□□□□ 0.13
VCPP55072 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VCPP55072 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.84■□□□□ 0.13
VCPP55072 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.84■□□□□ 0.13
VCPP55072 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VCPP55072 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.84■□□□□ 0.13
VCPP55072 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VCPP55072 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VCPP55072 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.84■□□□□ 0.13
VCPP55072 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VCPP55072 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VCPP55072 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VCPP55072 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC15.84■□□□□ 0.13
VCPP55072 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC15.84■□□□□ 0.13
VCPP55072 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.84■□□□□ 0.13
VCPP55072 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.84■□□□□ 0.13
VCPP55072 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.84■□□□□ 0.13
VCPP55072 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC15.84■□□□□ 0.13
VCPP55072 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC15.84■□□□□ 0.13
VCPP55072 ECM1P1-201ENST00000604092 1279 ntBASIC15.84■□□□□ 0.13
VCPP55072 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms