Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL4A4P53420 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
COL4A4P53420 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC15.33■□□□□ 0.04
COL4A4P53420 ACTG1P19-201ENST00000418987 1116 ntBASIC15.33■□□□□ 0.04
COL4A4P53420 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
COL4A4P53420 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL4A4P53420 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC15.33■□□□□ 0.04
COL4A4P53420 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC15.33■□□□□ 0.04
COL4A4P53420 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC15.33■□□□□ 0.04
COL4A4P53420 AC006548.2-201ENST00000605217 529 ntBASIC15.33■□□□□ 0.04
COL4A4P53420 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL4A4P53420 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL4A4P53420 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
COL4A4P53420 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL4A4P53420 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.33■□□□□ 0.04
COL4A4P53420 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL4A4P53420 MYADML-201ENST00000474610 2147 ntBASIC15.33■□□□□ 0.04
COL4A4P53420 AC232323.1-201ENST00000540724 2099 ntBASIC15.33■□□□□ 0.04
COL4A4P53420 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
COL4A4P53420 AC090505.1-201ENST00000430515 1834 ntBASIC15.33■□□□□ 0.04
COL4A4P53420 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL4A4P53420 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
COL4A4P53420 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC15.33■□□□□ 0.04
COL4A4P53420 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
COL4A4P53420 AC006372.4-201ENST00000624122 1543 ntBASIC15.32■□□□□ 0.04
COL4A4P53420 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC15.32■□□□□ 0.04
COL4A4P53420 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
COL4A4P53420 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC15.32■□□□□ 0.04
COL4A4P53420 MIR1301-201ENST00000408518 82 ntBASIC15.32■□□□□ 0.04
COL4A4P53420 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC15.32■□□□□ 0.04
COL4A4P53420 AL512599.1-201ENST00000430724 685 ntBASIC15.32■□□□□ 0.04
COL4A4P53420 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 RPS23-207ENST00000511844 530 ntTSL 2 BASIC15.32■□□□□ 0.04
COL4A4P53420 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC15.32■□□□□ 0.04
COL4A4P53420 AC095040.1-201ENST00000513286 675 ntBASIC15.32■□□□□ 0.04
COL4A4P53420 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC15.32■□□□□ 0.04
COL4A4P53420 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
COL4A4P53420 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
COL4A4P53420 MT2A-202ENST00000561491 581 ntTSL 2 BASIC15.32■□□□□ 0.04
COL4A4P53420 COX5A-205ENST00000568517 582 ntTSL 3 BASIC15.32■□□□□ 0.04
COL4A4P53420 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC15.32■□□□□ 0.04
COL4A4P53420 AP005212.2-201ENST00000584979 510 ntBASIC15.32■□□□□ 0.04
COL4A4P53420 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC15.32■□□□□ 0.04
COL4A4P53420 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC15.32■□□□□ 0.04
COL4A4P53420 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC15.32■□□□□ 0.04
COL4A4P53420 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC15.32■□□□□ 0.04
COL4A4P53420 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC15.32■□□□□ 0.04
COL4A4P53420 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.32■□□□□ 0.04
COL4A4P53420 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
COL4A4P53420 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.32■□□□□ 0.04
COL4A4P53420 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.32■□□□□ 0.04
COL4A4P53420 AC004554.1-201ENST00000422830 1468 ntBASIC15.32■□□□□ 0.04
COL4A4P53420 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
COL4A4P53420 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 MIR566-201ENST00000385187 94 ntBASIC15.32■□□□□ 0.04
COL4A4P53420 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL4A4P53420 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC15.32■□□□□ 0.04
COL4A4P53420 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC15.32■□□□□ 0.04
COL4A4P53420 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC15.32■□□□□ 0.04
COL4A4P53420 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC15.32■□□□□ 0.04
COL4A4P53420 AC004686.1-201ENST00000605113 538 ntBASIC15.32■□□□□ 0.04
COL4A4P53420 MIR6074-201ENST00000612054 107 ntBASIC15.32■□□□□ 0.04
COL4A4P53420 RARS-210ENST00000626454 177 ntTSL 5 BASIC15.32■□□□□ 0.04
COL4A4P53420 HELLS-212ENST00000630929 400 ntTSL 5 BASIC15.32■□□□□ 0.04
COL4A4P53420 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC15.32■□□□□ 0.04
COL4A4P53420 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
COL4A4P53420 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 LINC00554-201ENST00000564841 3011 ntBASIC15.31■□□□□ 0.04
COL4A4P53420 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.31■□□□□ 0.04
COL4A4P53420 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.31■□□□□ 0.04
COL4A4P53420 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.31■□□□□ 0.04
COL4A4P53420 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.31■□□□□ 0.04
COL4A4P53420 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC15.31■□□□□ 0.04
COL4A4P53420 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL4A4P53420 AC009093.10-201ENST00000641956 1442 ntBASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms