Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NUP98P52948 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NUP98P52948 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC17.88■□□□□ 0.45
NUP98P52948 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.88■□□□□ 0.45
NUP98P52948 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
NUP98P52948 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
NUP98P52948 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC17.88■□□□□ 0.45
NUP98P52948 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
NUP98P52948 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NUP98P52948 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NUP98P52948 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.87■□□□□ 0.45
NUP98P52948 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
NUP98P52948 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
NUP98P52948 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NUP98P52948 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
NUP98P52948 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
NUP98P52948 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NUP98P52948 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NUP98P52948 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
NUP98P52948 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NUP98P52948 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC17.87■□□□□ 0.45
NUP98P52948 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
NUP98P52948 GRPEL2P1-201ENST00000453145 339 ntBASIC17.87■□□□□ 0.45
NUP98P52948 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
NUP98P52948 CHCHD2P2-201ENST00000503744 321 ntBASIC17.87■□□□□ 0.45
NUP98P52948 SLC25A15P3-201ENST00000505530 290 ntBASIC17.87■□□□□ 0.45
NUP98P52948 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC17.87■□□□□ 0.45
NUP98P52948 AC011471.3-201ENST00000623576 402 ntBASIC17.87■□□□□ 0.45
NUP98P52948 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
NUP98P52948 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC17.87■□□□□ 0.45
NUP98P52948 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
NUP98P52948 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NUP98P52948 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
NUP98P52948 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC17.87■□□□□ 0.45
NUP98P52948 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.87■□□□□ 0.45
NUP98P52948 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
NUP98P52948 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NUP98P52948 MSANTD2P1-201ENST00000445341 1368 ntBASIC17.87■□□□□ 0.45
NUP98P52948 FTX-216ENST00000638985 1367 ntTSL 5 BASIC17.87■□□□□ 0.45
NUP98P52948 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC17.87■□□□□ 0.45
NUP98P52948 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
NUP98P52948 AP001267.2-201ENST00000532619 2086 ntBASIC17.87■□□□□ 0.45
NUP98P52948 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC17.87■□□□□ 0.45
NUP98P52948 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
NUP98P52948 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC17.87■□□□□ 0.45
NUP98P52948 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NUP98P52948 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC17.87■□□□□ 0.45
NUP98P52948 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.86■□□□□ 0.45
NUP98P52948 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC17.86■□□□□ 0.45
NUP98P52948 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC17.86■□□□□ 0.45
NUP98P52948 AC084752.1-201ENST00000509766 622 ntBASIC17.86■□□□□ 0.45
NUP98P52948 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC17.86■□□□□ 0.45
NUP98P52948 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC17.86■□□□□ 0.45
NUP98P52948 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC17.86■□□□□ 0.45
NUP98P52948 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17.86■□□□□ 0.45
NUP98P52948 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
NUP98P52948 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
NUP98P52948 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 AC023824.1-201ENST00000562945 2975 ntBASIC17.86■□□□□ 0.45
NUP98P52948 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
NUP98P52948 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.86■□□□□ 0.45
NUP98P52948 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC17.86■□□□□ 0.45
NUP98P52948 DUT-208ENST00000559540 1441 ntTSL 2 BASIC17.86■□□□□ 0.45
NUP98P52948 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.86■□□□□ 0.45
NUP98P52948 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 BAX-205ENST00000391871 687 ntTSL 5 BASIC17.86■□□□□ 0.45
NUP98P52948 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.86■□□□□ 0.45
NUP98P52948 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC17.86■□□□□ 0.45
NUP98P52948 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
NUP98P52948 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC17.86■□□□□ 0.45
NUP98P52948 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
NUP98P52948 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NUP98P52948 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
NUP98P52948 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
NUP98P52948 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
NUP98P52948 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
NUP98P52948 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
NUP98P52948 NME4-203ENST00000397722 1232 ntTSL 2 BASIC17.85■□□□□ 0.45
NUP98P52948 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
NUP98P52948 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC17.85■□□□□ 0.45
NUP98P52948 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
NUP98P52948 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC17.85■□□□□ 0.45
NUP98P52948 RNA5SP406-201ENST00000516106 112 ntBASIC17.85■□□□□ 0.45
NUP98P52948 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC17.85■□□□□ 0.45
NUP98P52948 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms