Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.3■□□□□ 0.04
PTPN9P43378 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTPN9P43378 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PTPN9P43378 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC15.3■□□□□ 0.04
PTPN9P43378 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC15.3■□□□□ 0.04
PTPN9P43378 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PTPN9P43378 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PTPN9P43378 FAM21FP-201ENST00000426241 1131 ntBASIC15.3■□□□□ 0.04
PTPN9P43378 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC15.3■□□□□ 0.04
PTPN9P43378 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
PTPN9P43378 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PTPN9P43378 ATP5G2P4-201ENST00000442175 420 ntBASIC15.3■□□□□ 0.04
PTPN9P43378 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
PTPN9P43378 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.3■□□□□ 0.04
PTPN9P43378 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
PTPN9P43378 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC15.3■□□□□ 0.04
PTPN9P43378 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC15.3■□□□□ 0.04
PTPN9P43378 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC15.3■□□□□ 0.04
PTPN9P43378 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC15.3■□□□□ 0.04
PTPN9P43378 MFF-223ENST00000524634 647 ntTSL 2 BASIC15.3■□□□□ 0.04
PTPN9P43378 MIR4741-201ENST00000579822 90 ntBASIC15.3■□□□□ 0.04
PTPN9P43378 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
PTPN9P43378 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTPN9P43378 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.3■□□□□ 0.04
PTPN9P43378 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PTPN9P43378 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PTPN9P43378 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PTPN9P43378 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PTPN9P43378 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTPN9P43378 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTPN9P43378 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC15.3■□□□□ 0.04
PTPN9P43378 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PTPN9P43378 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PTPN9P43378 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN9P43378 HPD-204ENST00000543163 1709 ntTSL 5 BASIC15.29■□□□□ 0.04
PTPN9P43378 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
PTPN9P43378 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PTPN9P43378 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
PTPN9P43378 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN9P43378 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 AC020910.6-201ENST00000623084 1459 ntBASIC15.29■□□□□ 0.04
PTPN9P43378 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN9P43378 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
PTPN9P43378 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 AC064801.2-201ENST00000625052 1303 ntBASIC15.29■□□□□ 0.04
PTPN9P43378 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
PTPN9P43378 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.29■□□□□ 0.04
PTPN9P43378 GAS5-209ENST00000430245 723 ntTSL 3 BASIC15.29■□□□□ 0.04
PTPN9P43378 AL157407.1-201ENST00000435784 904 ntBASIC15.29■□□□□ 0.04
PTPN9P43378 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN9P43378 ACR-203ENST00000529621 708 ntTSL 5 BASIC15.29■□□□□ 0.04
PTPN9P43378 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC15.29■□□□□ 0.04
PTPN9P43378 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC15.29■□□□□ 0.04
PTPN9P43378 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN9P43378 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN9P43378 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
PTPN9P43378 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN9P43378 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN9P43378 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN9P43378 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PTPN9P43378 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN9P43378 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN9P43378 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC15.29■□□□□ 0.04
PTPN9P43378 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC15.28■□□□□ 0.04
PTPN9P43378 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
PTPN9P43378 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN9P43378 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 CICP4-201ENST00000447359 2812 ntBASIC15.28■□□□□ 0.04
PTPN9P43378 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PTPN9P43378 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
PTPN9P43378 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 AL354877.1-201ENST00000424412 413 ntBASIC15.28■□□□□ 0.04
PTPN9P43378 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms