Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BDNFP23560 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.53■□□□□ 0.08
BDNFP23560 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
BDNFP23560 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC15.53■□□□□ 0.08
BDNFP23560 KRT8P28-201ENST00000433288 1390 ntBASIC15.53■□□□□ 0.08
BDNFP23560 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.53■□□□□ 0.08
BDNFP23560 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
BDNFP23560 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 HLA-J-204ENST00000495278 958 ntBASIC15.53■□□□□ 0.08
BDNFP23560 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC15.53■□□□□ 0.08
BDNFP23560 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC15.53■□□□□ 0.08
BDNFP23560 NDUFV2P1-201ENST00000596415 907 ntBASIC15.53■□□□□ 0.08
BDNFP23560 AL136295.7-201ENST00000619226 1200 ntBASIC15.53■□□□□ 0.08
BDNFP23560 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC15.53■□□□□ 0.08
BDNFP23560 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.53■□□□□ 0.08
BDNFP23560 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
BDNFP23560 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.53■□□□□ 0.08
BDNFP23560 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
BDNFP23560 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
BDNFP23560 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.53■□□□□ 0.08
BDNFP23560 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.53■□□□□ 0.08
BDNFP23560 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.53■□□□□ 0.08
BDNFP23560 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC15.53■□□□□ 0.08
BDNFP23560 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
BDNFP23560 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BDNFP23560 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC15.53■□□□□ 0.08
BDNFP23560 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC15.53■□□□□ 0.08
BDNFP23560 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
BDNFP23560 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
BDNFP23560 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
BDNFP23560 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
BDNFP23560 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
BDNFP23560 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
BDNFP23560 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
BDNFP23560 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
BDNFP23560 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
BDNFP23560 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
BDNFP23560 FAS-202ENST00000352159 1722 ntTSL 5 BASIC15.52■□□□□ 0.08
BDNFP23560 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
BDNFP23560 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
BDNFP23560 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
BDNFP23560 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
BDNFP23560 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
BDNFP23560 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
BDNFP23560 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
BDNFP23560 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
BDNFP23560 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
BDNFP23560 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
BDNFP23560 SDCCAG3P2-201ENST00000326105 1023 ntBASIC15.52■□□□□ 0.08
BDNFP23560 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
BDNFP23560 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
BDNFP23560 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
BDNFP23560 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
BDNFP23560 DEF8-202ENST00000418391 852 ntTSL 2 BASIC15.52■□□□□ 0.08
BDNFP23560 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC15.52■□□□□ 0.08
BDNFP23560 AC022217.1-201ENST00000521069 738 ntBASIC15.52■□□□□ 0.08
BDNFP23560 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC15.52■□□□□ 0.08
BDNFP23560 SDHD-202ENST00000525291 790 ntTSL 3 BASIC15.52■□□□□ 0.08
BDNFP23560 SNORD3B-2-202ENST00000571722 791 ntBASIC15.52■□□□□ 0.08
BDNFP23560 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC15.52■□□□□ 0.08
BDNFP23560 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
BDNFP23560 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
BDNFP23560 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC15.52■□□□□ 0.07
BDNFP23560 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
BDNFP23560 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.52■□□□□ 0.07
BDNFP23560 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
BDNFP23560 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
BDNFP23560 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
BDNFP23560 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
BDNFP23560 TMBIM7P-202ENST00000641474 1516 ntBASIC15.52■□□□□ 0.07
BDNFP23560 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.52■□□□□ 0.07
BDNFP23560 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.52■□□□□ 0.07
BDNFP23560 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
BDNFP23560 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
BDNFP23560 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
BDNFP23560 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
BDNFP23560 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
BDNFP23560 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC15.52■□□□□ 0.07
BDNFP23560 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms