Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
COL6A2P12110 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC14.63□□□□□ -0.07
COL6A2P12110 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.63□□□□□ -0.07
COL6A2P12110 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.63□□□□□ -0.07
COL6A2P12110 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A2P12110 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A2P12110 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
COL6A2P12110 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.63□□□□□ -0.07
COL6A2P12110 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A2P12110 AC022137.2-201ENST00000503482 481 ntBASIC14.63□□□□□ -0.07
COL6A2P12110 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.63□□□□□ -0.07
COL6A2P12110 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.63□□□□□ -0.07
COL6A2P12110 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.63□□□□□ -0.07
COL6A2P12110 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.63□□□□□ -0.07
COL6A2P12110 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A2P12110 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A2P12110 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
COL6A2P12110 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
COL6A2P12110 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.63□□□□□ -0.07
COL6A2P12110 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A2P12110 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A2P12110 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A2P12110 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
COL6A2P12110 AC011498.7-201ENST00000624986 2027 ntBASIC14.63□□□□□ -0.07
COL6A2P12110 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.63□□□□□ -0.07
COL6A2P12110 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A2P12110 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.62□□□□□ -0.07
COL6A2P12110 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
COL6A2P12110 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
COL6A2P12110 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
COL6A2P12110 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A2P12110 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A2P12110 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 AC015818.8-201ENST00000587907 1519 ntBASIC14.62□□□□□ -0.07
COL6A2P12110 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
COL6A2P12110 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A2P12110 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
COL6A2P12110 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.62□□□□□ -0.07
COL6A2P12110 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A2P12110 AC098850.1-201ENST00000419919 790 ntBASIC14.62□□□□□ -0.07
COL6A2P12110 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.62□□□□□ -0.07
COL6A2P12110 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A2P12110 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.62□□□□□ -0.07
COL6A2P12110 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.62□□□□□ -0.07
COL6A2P12110 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.62□□□□□ -0.07
COL6A2P12110 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.62□□□□□ -0.07
COL6A2P12110 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A2P12110 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.62□□□□□ -0.07
COL6A2P12110 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A2P12110 SORD2P-201ENST00000558556 1069 ntBASIC14.62□□□□□ -0.07
COL6A2P12110 CLUHP6-201ENST00000580789 941 ntBASIC14.62□□□□□ -0.07
COL6A2P12110 AC005498.2-205ENST00000593218 784 ntBASIC14.62□□□□□ -0.07
COL6A2P12110 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A2P12110 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.62□□□□□ -0.07
COL6A2P12110 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
COL6A2P12110 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.62□□□□□ -0.07
COL6A2P12110 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
COL6A2P12110 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.62□□□□□ -0.07
COL6A2P12110 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A2P12110 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A2P12110 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A2P12110 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.61□□□□□ -0.07
COL6A2P12110 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.61□□□□□ -0.07
COL6A2P12110 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms