Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 AC064836.3-201ENST00000607928 673 ntBASIC11.18□□□□□ -0.62
HLA-DQA1P01909 CAND2-206ENST00000626378 333 ntTSL 5 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 NBEA-204ENST00000400445 11119 ntAPPRIS P2 TSL 5 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 RN7SL832P-201ENST00000607781 1756 ntBASIC11.18□□□□□ -0.62
HLA-DQA1P01909 MKRN5P-201ENST00000445263 1467 ntBASIC11.18□□□□□ -0.62
HLA-DQA1P01909 NRXN1-210ENST00000406316 9375 ntAPPRIS P3 TSL 5 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC11.18□□□□□ -0.62
HLA-DQA1P01909 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 MED15P5-201ENST00000423150 992 ntBASIC11.17□□□□□ -0.62
HLA-DQA1P01909 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 AC074044.1-201ENST00000609673 707 ntBASIC11.17□□□□□ -0.62
HLA-DQA1P01909 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 AC010507.1-201ENST00000633895 436 ntBASIC11.17□□□□□ -0.62
HLA-DQA1P01909 AC011840.2-201ENST00000563063 1520 ntBASIC11.17□□□□□ -0.62
HLA-DQA1P01909 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 CLK3P2-201ENST00000427566 1453 ntBASIC11.17□□□□□ -0.62
HLA-DQA1P01909 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 ARPIN-201ENST00000357484 7591 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 MFF-204ENST00000353339 2186 ntTSL 5 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
HLA-DQA1P01909 C5AR1-201ENST00000355085 2311 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms