Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
USP28Q96RU2 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC16.89■□□□□ 0.29
USP28Q96RU2 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC16.89■□□□□ 0.29
USP28Q96RU2 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.89■□□□□ 0.29
USP28Q96RU2 RN7SKP175-201ENST00000408472 289 ntBASIC16.89■□□□□ 0.29
USP28Q96RU2 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.89■□□□□ 0.29
USP28Q96RU2 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 AP003171.2-201ENST00000528208 925 ntBASIC16.89■□□□□ 0.29
USP28Q96RU2 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 PTP4A1P2-201ENST00000546033 454 ntBASIC16.89■□□□□ 0.29
USP28Q96RU2 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.89■□□□□ 0.29
USP28Q96RU2 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC16.89■□□□□ 0.29
USP28Q96RU2 ETV2-208ENST00000621247 941 ntTSL 5 BASIC16.89■□□□□ 0.29
USP28Q96RU2 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC16.89■□□□□ 0.29
USP28Q96RU2 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
USP28Q96RU2 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
USP28Q96RU2 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
USP28Q96RU2 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USP28Q96RU2 AC126755.1-201ENST00000525846 6405 ntBASIC16.89■□□□□ 0.29
USP28Q96RU2 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.88■□□□□ 0.29
USP28Q96RU2 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP28Q96RU2 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
USP28Q96RU2 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP28Q96RU2 AP000593.2-201ENST00000542775 1433 ntBASIC16.88■□□□□ 0.29
USP28Q96RU2 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP28Q96RU2 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP28Q96RU2 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC16.88■□□□□ 0.29
USP28Q96RU2 F10-203ENST00000409306 1450 ntTSL 3 BASIC16.88■□□□□ 0.29
USP28Q96RU2 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC16.88■□□□□ 0.29
USP28Q96RU2 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP28Q96RU2 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
USP28Q96RU2 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP28Q96RU2 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
USP28Q96RU2 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
USP28Q96RU2 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP28Q96RU2 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.88■□□□□ 0.29
USP28Q96RU2 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP28Q96RU2 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.88■□□□□ 0.29
USP28Q96RU2 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.88■□□□□ 0.29
USP28Q96RU2 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
USP28Q96RU2 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP28Q96RU2 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP28Q96RU2 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC16.88■□□□□ 0.29
USP28Q96RU2 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
USP28Q96RU2 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP28Q96RU2 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USP28Q96RU2 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.88■□□□□ 0.29
USP28Q96RU2 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC16.87■□□□□ 0.29
USP28Q96RU2 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC16.87■□□□□ 0.29
USP28Q96RU2 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP28Q96RU2 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP28Q96RU2 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
USP28Q96RU2 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP28Q96RU2 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP28Q96RU2 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP28Q96RU2 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
USP28Q96RU2 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP28Q96RU2 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP28Q96RU2 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP28Q96RU2 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.87■□□□□ 0.29
USP28Q96RU2 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP28Q96RU2 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.87■□□□□ 0.29
USP28Q96RU2 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP28Q96RU2 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.87■□□□□ 0.29
USP28Q96RU2 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.87■□□□□ 0.29
USP28Q96RU2 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP28Q96RU2 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.87■□□□□ 0.29
USP28Q96RU2 ALG3P1-201ENST00000508806 1114 ntBASIC16.87■□□□□ 0.29
USP28Q96RU2 AP001889.1-201ENST00000525414 633 ntBASIC16.87■□□□□ 0.29
USP28Q96RU2 SORD2P-201ENST00000558556 1069 ntBASIC16.87■□□□□ 0.29
USP28Q96RU2 AC106820.3-201ENST00000561653 397 ntBASIC16.87■□□□□ 0.29
USP28Q96RU2 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP28Q96RU2 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16.87■□□□□ 0.29
USP28Q96RU2 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16.87■□□□□ 0.29
USP28Q96RU2 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
USP28Q96RU2 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC16.87■□□□□ 0.29
USP28Q96RU2 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
USP28Q96RU2 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USP28Q96RU2 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
USP28Q96RU2 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
USP28Q96RU2 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms