Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 TKT-201ENST00000296289 1931 ntTSL 5 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 AC015802.1-201ENST00000588104 1449 ntBASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 AC041040.2-201ENST00000622926 2899 ntBASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 RBM8B-201ENST00000555532 525 ntBASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 AC097724.1-201ENST00000609581 426 ntBASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 AC005695.3-201ENST00000614522 232 ntBASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 ABR-228ENST00000574437 3196 ntTSL 5 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 HPD-204ENST00000543163 1709 ntTSL 5 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 AC005840.4-201ENST00000541242 2494 ntBASIC15□□□□□ -0.01
SHROOM3Q8TF72 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 CDC23-208ENST00000505120 455 ntTSL 3 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 SORD2P-201ENST00000558556 1069 ntBASIC15□□□□□ -0.01
SHROOM3Q8TF72 MIR4722-201ENST00000578292 60 ntBASIC15□□□□□ -0.01
SHROOM3Q8TF72 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
SHROOM3Q8TF72 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15□□□□□ -0.01
SHROOM3Q8TF72 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHROOM3Q8TF72 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SHROOM3Q8TF72 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHROOM3Q8TF72 AC020910.6-201ENST00000623084 1459 ntBASIC14.99□□□□□ -0.01
SHROOM3Q8TF72 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SHROOM3Q8TF72 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
SHROOM3Q8TF72 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHROOM3Q8TF72 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHROOM3Q8TF72 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms