Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 AC112693.3-201ENST00000624819 1983 ntBASIC19.63■□□□□ 0.73
NPHP3Q7Z494 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 AC046158.3-201ENST00000624947 2558 ntBASIC19.63■□□□□ 0.73
NPHP3Q7Z494 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 RPL3P5-201ENST00000441645 1232 ntBASIC19.62■□□□□ 0.73
NPHP3Q7Z494 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 C18orf15-201ENST00000623680 2534 ntBASIC19.62■□□□□ 0.73
NPHP3Q7Z494 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP3Q7Z494 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 LINC00265-2P-201ENST00000413372 782 ntBASIC19.61■□□□□ 0.73
NPHP3Q7Z494 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 PFN2-212ENST00000490975 858 ntTSL 4 BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 AC092862.1-201ENST00000541534 533 ntBASIC19.61■□□□□ 0.73
NPHP3Q7Z494 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 AC145285.5-201ENST00000562217 361 ntBASIC19.61■□□□□ 0.73
NPHP3Q7Z494 FTLP5-201ENST00000586853 534 ntBASIC19.61■□□□□ 0.73
NPHP3Q7Z494 AP005264.5-201ENST00000590066 467 ntBASIC19.61■□□□□ 0.73
NPHP3Q7Z494 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 TP53-221ENST00000615910 1149 ntTSL 5 BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 AP000769.1-203ENST00000637245 208 ntBASIC19.61■□□□□ 0.73
NPHP3Q7Z494 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 AL365203.3-201ENST00000609742 2057 ntBASIC19.61■□□□□ 0.73
NPHP3Q7Z494 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
NPHP3Q7Z494 LAP3P2-201ENST00000454686 1454 ntBASIC19.61■□□□□ 0.73
NPHP3Q7Z494 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms