Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 UBE3A-226ENST00000637886 8725 ntAPPRIS ALT1 TSL 5 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 KLF2P4-201ENST00000451959 1225 ntBASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 IGHJ2P-201ENST00000454480 60 ntBASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 CTBP2P5-201ENST00000454986 1264 ntBASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 LITAF-210ENST00000571976 548 ntTSL 2 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 LITAF-214ENST00000574703 486 ntTSL 2 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 AL133215.2-201ENST00000609242 977 ntBASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 TK1-203ENST00000588734 1681 ntTSL 2 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 TP73-201ENST00000346387 4854 ntTSL 5 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 Z97205.2-201ENST00000564697 1639 ntBASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PDLIM3Q53GG5 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
PDLIM3Q53GG5 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC12.4□□□□□ -0.43
PDLIM3Q53GG5 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
PDLIM3Q53GG5 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
PDLIM3Q53GG5 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.43
PDLIM3Q53GG5 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC12.4□□□□□ -0.43
PDLIM3Q53GG5 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
PDLIM3Q53GG5 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.43
PDLIM3Q53GG5 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC12.4□□□□□ -0.43
PDLIM3Q53GG5 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
PDLIM3Q53GG5 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
PDLIM3Q53GG5 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
PDLIM3Q53GG5 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
PDLIM3Q53GG5 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.43
PDLIM3Q53GG5 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms