Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.98□□□□□ -0.17
RAE1P78406 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC13.98□□□□□ -0.17
RAE1P78406 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
RAE1P78406 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
RAE1P78406 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC13.98□□□□□ -0.17
RAE1P78406 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
RAE1P78406 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC13.98□□□□□ -0.17
RAE1P78406 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.98□□□□□ -0.17
RAE1P78406 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
RAE1P78406 ARSEP1-201ENST00000420443 635 ntBASIC13.98□□□□□ -0.17
RAE1P78406 RGS5-214ENST00000429865 754 ntTSL 3 BASIC13.98□□□□□ -0.17
RAE1P78406 CICP12-201ENST00000455801 843 ntBASIC13.98□□□□□ -0.17
RAE1P78406 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.98□□□□□ -0.17
RAE1P78406 COX5BP1-201ENST00000507622 393 ntBASIC13.98□□□□□ -0.17
RAE1P78406 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.98□□□□□ -0.17
RAE1P78406 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC13.98□□□□□ -0.17
RAE1P78406 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
RAE1P78406 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC13.98□□□□□ -0.17
RAE1P78406 AL358472.5-202ENST00000641448 1267 ntBASIC13.98□□□□□ -0.17
RAE1P78406 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 AL354989.2-201ENST00000435838 1540 ntBASIC13.98□□□□□ -0.17
RAE1P78406 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC13.98□□□□□ -0.17
RAE1P78406 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC13.98□□□□□ -0.17
RAE1P78406 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RAE1P78406 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.98□□□□□ -0.17
RAE1P78406 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC13.98□□□□□ -0.17
RAE1P78406 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
RAE1P78406 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
RAE1P78406 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.97□□□□□ -0.17
RAE1P78406 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.97□□□□□ -0.17
RAE1P78406 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
RAE1P78406 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC13.97□□□□□ -0.17
RAE1P78406 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC13.97□□□□□ -0.17
RAE1P78406 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
RAE1P78406 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
RAE1P78406 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
RAE1P78406 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
RAE1P78406 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.97□□□□□ -0.17
RAE1P78406 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.97□□□□□ -0.17
RAE1P78406 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.97□□□□□ -0.17
RAE1P78406 TAF8-206ENST00000472818 719 ntTSL 2 BASIC13.97□□□□□ -0.17
RAE1P78406 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC13.97□□□□□ -0.17
RAE1P78406 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC13.97□□□□□ -0.17
RAE1P78406 C2orf69P2-201ENST00000562032 1123 ntBASIC13.97□□□□□ -0.17
RAE1P78406 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
RAE1P78406 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC13.97□□□□□ -0.17
RAE1P78406 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC13.97□□□□□ -0.17
RAE1P78406 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.97□□□□□ -0.17
RAE1P78406 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC13.97□□□□□ -0.17
RAE1P78406 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
RAE1P78406 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
RAE1P78406 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
RAE1P78406 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.97□□□□□ -0.17
RAE1P78406 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC13.97□□□□□ -0.17
RAE1P78406 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
RAE1P78406 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RAE1P78406 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms