Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC15.3■□□□□ 0.04
NEK3P51956 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC15.3■□□□□ 0.04
NEK3P51956 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC15.3■□□□□ 0.04
NEK3P51956 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 AC010328.2-201ENST00000597698 1111 ntBASIC15.3■□□□□ 0.04
NEK3P51956 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.3■□□□□ 0.04
NEK3P51956 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.3■□□□□ 0.04
NEK3P51956 AL603764.1-201ENST00000636452 321 ntBASIC15.3■□□□□ 0.04
NEK3P51956 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
NEK3P51956 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC15.3■□□□□ 0.04
NEK3P51956 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
NEK3P51956 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
NEK3P51956 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.29■□□□□ 0.04
NEK3P51956 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.29■□□□□ 0.04
NEK3P51956 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
NEK3P51956 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
NEK3P51956 TUBB1P2-201ENST00000422712 1306 ntBASIC15.29■□□□□ 0.04
NEK3P51956 AHCYP2-201ENST00000430630 1300 ntBASIC15.29■□□□□ 0.04
NEK3P51956 TUBB1P1-201ENST00000503144 1300 ntBASIC15.29■□□□□ 0.04
NEK3P51956 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.29■□□□□ 0.04
NEK3P51956 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.29■□□□□ 0.04
NEK3P51956 TPO-206ENST00000382269 1155 ntTSL 5 BASIC15.29■□□□□ 0.04
NEK3P51956 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.29■□□□□ 0.04
NEK3P51956 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.29■□□□□ 0.04
NEK3P51956 CD8B2-202ENST00000417670 633 ntBASIC15.29■□□□□ 0.04
NEK3P51956 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.29■□□□□ 0.04
NEK3P51956 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.29■□□□□ 0.04
NEK3P51956 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC15.29■□□□□ 0.04
NEK3P51956 AL355994.2-201ENST00000447882 704 ntBASIC15.29■□□□□ 0.04
NEK3P51956 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.29■□□□□ 0.04
NEK3P51956 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.29■□□□□ 0.04
NEK3P51956 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.29■□□□□ 0.04
NEK3P51956 ECM1P1-201ENST00000604092 1279 ntBASIC15.29■□□□□ 0.04
NEK3P51956 AC006453.4-201ENST00000636949 1252 ntBASIC15.29■□□□□ 0.04
NEK3P51956 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
NEK3P51956 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.29■□□□□ 0.04
NEK3P51956 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.29■□□□□ 0.04
NEK3P51956 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.29■□□□□ 0.04
NEK3P51956 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.29■□□□□ 0.04
NEK3P51956 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NEK3P51956 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
NEK3P51956 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC15.28■□□□□ 0.04
NEK3P51956 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 REXO1L6P-201ENST00000603433 1515 ntBASIC15.28■□□□□ 0.04
NEK3P51956 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
NEK3P51956 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC15.28■□□□□ 0.04
NEK3P51956 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
NEK3P51956 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.28■□□□□ 0.04
NEK3P51956 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.28■□□□□ 0.04
NEK3P51956 EIF3FP3-201ENST00000434851 1086 ntBASIC15.28■□□□□ 0.04
NEK3P51956 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.28■□□□□ 0.04
NEK3P51956 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC15.28■□□□□ 0.04
NEK3P51956 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NEK3P51956 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms