Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC15.68■□□□□ 0.1
LIG3P49916 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
LIG3P49916 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.68■□□□□ 0.1
LIG3P49916 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC15.68■□□□□ 0.1
LIG3P49916 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
LIG3P49916 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
LIG3P49916 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
LIG3P49916 AL121723.1-201ENST00000445194 1519 ntBASIC15.68■□□□□ 0.1
LIG3P49916 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC15.68■□□□□ 0.1
LIG3P49916 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.67■□□□□ 0.1
LIG3P49916 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC15.67■□□□□ 0.1
LIG3P49916 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC15.67■□□□□ 0.1
LIG3P49916 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
LIG3P49916 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.67■□□□□ 0.1
LIG3P49916 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
LIG3P49916 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
LIG3P49916 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
LIG3P49916 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
LIG3P49916 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC15.67■□□□□ 0.1
LIG3P49916 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
LIG3P49916 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.67■□□□□ 0.1
LIG3P49916 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 GALT-202ENST00000450095 1280 ntTSL 2 BASIC15.67■□□□□ 0.1
LIG3P49916 KRT18P43-201ENST00000469825 1281 ntBASIC15.67■□□□□ 0.1
LIG3P49916 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.67■□□□□ 0.1
LIG3P49916 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC15.67■□□□□ 0.1
LIG3P49916 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.67■□□□□ 0.1
LIG3P49916 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.67■□□□□ 0.1
LIG3P49916 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.67■□□□□ 0.1
LIG3P49916 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.67■□□□□ 0.1
LIG3P49916 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.67■□□□□ 0.1
LIG3P49916 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.67■□□□□ 0.1
LIG3P49916 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.67■□□□□ 0.1
LIG3P49916 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
LIG3P49916 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
LIG3P49916 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LIG3P49916 AC130686.1-201ENST00000622936 2466 ntBASIC15.67■□□□□ 0.1
LIG3P49916 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
LIG3P49916 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
LIG3P49916 AC113367.3-201ENST00000508316 1912 ntBASIC15.66■□□□□ 0.1
LIG3P49916 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC15.66■□□□□ 0.1
LIG3P49916 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC15.66■□□□□ 0.1
LIG3P49916 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
LIG3P49916 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LIG3P49916 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LIG3P49916 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.66■□□□□ 0.1
LIG3P49916 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.66■□□□□ 0.1
LIG3P49916 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.66■□□□□ 0.1
LIG3P49916 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
LIG3P49916 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.66■□□□□ 0.1
LIG3P49916 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
LIG3P49916 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.66■□□□□ 0.1
LIG3P49916 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.66■□□□□ 0.1
LIG3P49916 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.66■□□□□ 0.1
LIG3P49916 WFDC1-204ENST00000613603 549 ntBASIC15.66■□□□□ 0.1
LIG3P49916 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.66■□□□□ 0.1
LIG3P49916 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
LIG3P49916 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC15.66■□□□□ 0.1
LIG3P49916 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
LIG3P49916 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
LIG3P49916 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
LIG3P49916 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms