Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SORD2P-201ENST00000558556 1069 ntBASIC15.16■□□□□ 0.02
HMGA1P17096 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC15.16■□□□□ 0.02
HMGA1P17096 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
HMGA1P17096 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGA1P17096 AC018635.2-201ENST00000608625 364 ntBASIC15.16■□□□□ 0.02
HMGA1P17096 AC051619.9-201ENST00000623237 597 ntBASIC15.16■□□□□ 0.02
HMGA1P17096 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGA1P17096 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGA1P17096 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
HMGA1P17096 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HMGA1P17096 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGA1P17096 AGGF1P1-201ENST00000509500 2073 ntBASIC15.16■□□□□ 0.02
HMGA1P17096 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
HMGA1P17096 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGA1P17096 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
HMGA1P17096 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGA1P17096 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGA1P17096 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGA1P17096 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGA1P17096 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
HMGA1P17096 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGA1P17096 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
HMGA1P17096 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
HMGA1P17096 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC15.15■□□□□ 0.02
HMGA1P17096 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 MIR557-201ENST00000385239 98 ntBASIC15.15■□□□□ 0.02
HMGA1P17096 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGA1P17096 AC092580.1-201ENST00000433998 658 ntBASIC15.15■□□□□ 0.02
HMGA1P17096 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC15.15■□□□□ 0.02
HMGA1P17096 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
HMGA1P17096 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 LY6E-208ENST00000520531 490 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGA1P17096 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
HMGA1P17096 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC15.15■□□□□ 0.02
HMGA1P17096 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC15.15■□□□□ 0.02
HMGA1P17096 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC15.15■□□□□ 0.02
HMGA1P17096 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGA1P17096 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.15■□□□□ 0.02
HMGA1P17096 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC15.15■□□□□ 0.02
HMGA1P17096 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
HMGA1P17096 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
HMGA1P17096 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
HMGA1P17096 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGA1P17096 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGA1P17096 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
HMGA1P17096 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
HMGA1P17096 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
HMGA1P17096 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
HMGA1P17096 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGA1P17096 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGA1P17096 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGA1P17096 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 DUX4L50-201ENST00000455245 715 ntBASIC15.14■□□□□ 0.01
HMGA1P17096 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC15.14■□□□□ 0.01
HMGA1P17096 RN7SL530P-201ENST00000485097 298 ntBASIC15.14■□□□□ 0.01
HMGA1P17096 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC15.14■□□□□ 0.01
HMGA1P17096 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGA1P17096 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC15.14■□□□□ 0.01
HMGA1P17096 AC093752.3-201ENST00000567343 901 ntBASIC15.14■□□□□ 0.01
HMGA1P17096 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGA1P17096 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC15.14■□□□□ 0.01
HMGA1P17096 AC090386.2-201ENST00000623010 1039 ntBASIC15.14■□□□□ 0.01
HMGA1P17096 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.14■□□□□ 0.01
HMGA1P17096 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGA1P17096 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGA1P17096 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms