Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 AC009884.2-201ENST00000603110 324 ntBASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 AL606495.2-201ENST00000605867 535 ntBASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 AC026740.1-201ENST00000607068 791 ntBASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 AL136172.1-201ENST00000598590 1394 ntBASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 LINC00528-201ENST00000600723 2160 ntBASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 AC092135.3-201ENST00000624151 1846 ntBASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 AP002414.2-201ENST00000591780 3365 ntBASIC13.15□□□□□ -0.3
CLCF1Q9UBD9 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
CLCF1Q9UBD9 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC13.15□□□□□ -0.31
CLCF1Q9UBD9 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.15□□□□□ -0.31
CLCF1Q9UBD9 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 AC138969.2-201ENST00000532739 9932 ntBASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 AL157407.1-201ENST00000435784 904 ntBASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 AC011742.3-201ENST00000439053 820 ntBASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 AL645933.1-201ENST00000440087 609 ntBASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 HLA-J-204ENST00000495278 958 ntBASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 AL590440.2-201ENST00000641973 1595 ntBASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC13.14□□□□□ -0.31
CLCF1Q9UBD9 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 TUBBP5-203ENST00000508529 1334 ntBASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 MBLAC2-202ENST00000514906 1936 ntBASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 TCAF2P1-201ENST00000291129 2421 ntBASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 SLC25A24P2-201ENST00000415059 510 ntBASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 SPTLC1P5-201ENST00000450718 252 ntBASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms