Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CISHQ9NSE2 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
CISHQ9NSE2 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.75■□□□□ 0.11
CISHQ9NSE2 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CISHQ9NSE2 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CISHQ9NSE2 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.75■□□□□ 0.11
CISHQ9NSE2 E2F3P2-201ENST00000447755 1422 ntBASIC15.75■□□□□ 0.11
CISHQ9NSE2 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CISHQ9NSE2 AC215219.1-201ENST00000400706 1817 ntBASIC15.75■□□□□ 0.11
CISHQ9NSE2 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CISHQ9NSE2 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.75■□□□□ 0.11
CISHQ9NSE2 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CISHQ9NSE2 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CISHQ9NSE2 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CISHQ9NSE2 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CISHQ9NSE2 KRT8P28-201ENST00000433288 1390 ntBASIC15.75■□□□□ 0.11
CISHQ9NSE2 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CISHQ9NSE2 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.74■□□□□ 0.11
CISHQ9NSE2 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.74■□□□□ 0.11
CISHQ9NSE2 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.74■□□□□ 0.11
CISHQ9NSE2 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CISHQ9NSE2 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.74■□□□□ 0.11
CISHQ9NSE2 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CISHQ9NSE2 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 AL035414.1-201ENST00000451327 857 ntBASIC15.74■□□□□ 0.11
CISHQ9NSE2 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.74■□□□□ 0.11
CISHQ9NSE2 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
CISHQ9NSE2 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC15.74■□□□□ 0.11
CISHQ9NSE2 AL008721.1-201ENST00000609964 604 ntBASIC15.74■□□□□ 0.11
CISHQ9NSE2 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CISHQ9NSE2 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.74■□□□□ 0.11
CISHQ9NSE2 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
CISHQ9NSE2 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC15.74■□□□□ 0.11
CISHQ9NSE2 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.11
CISHQ9NSE2 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.11
CISHQ9NSE2 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CISHQ9NSE2 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CISHQ9NSE2 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.73■□□□□ 0.11
CISHQ9NSE2 AC015818.8-201ENST00000587907 1519 ntBASIC15.73■□□□□ 0.11
CISHQ9NSE2 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
CISHQ9NSE2 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.73■□□□□ 0.11
CISHQ9NSE2 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.73■□□□□ 0.11
CISHQ9NSE2 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CISHQ9NSE2 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC15.73■□□□□ 0.11
CISHQ9NSE2 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.73■□□□□ 0.11
CISHQ9NSE2 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC15.73■□□□□ 0.11
CISHQ9NSE2 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 DUX4L46-201ENST00000566845 751 ntBASIC15.73■□□□□ 0.11
CISHQ9NSE2 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC15.73■□□□□ 0.11
CISHQ9NSE2 RN7SL560P-201ENST00000577943 264 ntBASIC15.73■□□□□ 0.11
CISHQ9NSE2 MIR4783-201ENST00000580343 82 ntBASIC15.73■□□□□ 0.11
CISHQ9NSE2 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.73■□□□□ 0.11
CISHQ9NSE2 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC15.73■□□□□ 0.11
CISHQ9NSE2 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC15.73■□□□□ 0.11
CISHQ9NSE2 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC15.73■□□□□ 0.11
CISHQ9NSE2 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.73■□□□□ 0.11
CISHQ9NSE2 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
CISHQ9NSE2 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.73■□□□□ 0.11
CISHQ9NSE2 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CISHQ9NSE2 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms