Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC28BQ9BUN5 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 DDC-213ENST00000617822 1809 ntTSL 3 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 COA5-202ENST00000409997 557 ntTSL 4 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 AC114501.2-201ENST00000439631 535 ntBASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 CROT-203ENST00000419147 2959 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.44□□□□□ -0.1
CCDC28BQ9BUN5 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 AL139094.1-201ENST00000405549 1188 ntBASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms