Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC14.46□□□□□ -0.09
CCDC3Q9BQI4 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC3Q9BQI4 AL136295.7-201ENST00000619226 1200 ntBASIC14.46□□□□□ -0.09
CCDC3Q9BQI4 AL805961.1-203ENST00000641078 1258 ntBASIC14.46□□□□□ -0.09
CCDC3Q9BQI4 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC3Q9BQI4 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC3Q9BQI4 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC3Q9BQI4 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC3Q9BQI4 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.46□□□□□ -0.1
CCDC3Q9BQI4 LINC00554-201ENST00000564841 3011 ntBASIC14.46□□□□□ -0.1
CCDC3Q9BQI4 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC3Q9BQI4 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC3Q9BQI4 AC006486.2-201ENST00000624246 2199 ntBASIC14.46□□□□□ -0.1
CCDC3Q9BQI4 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC3Q9BQI4 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC3Q9BQI4 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 REXO1L2P-201ENST00000425429 2069 ntBASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 AC023157.3-201ENST00000619086 2088 ntBASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 SLC16A6P1-201ENST00000413214 1059 ntBASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 E2F3P2-201ENST00000447755 1422 ntBASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 SUPT4H1P2-201ENST00000501248 353 ntBASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 AC024681.1-201ENST00000521917 487 ntBASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 CSH2-206ENST00000560142 749 ntTSL 5 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 MIR4783-201ENST00000580343 82 ntBASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 AC090164.2-201ENST00000611487 516 ntBASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 PCBP2-OT1-201ENST00000634357 590 ntBASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
CCDC3Q9BQI4 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 AC091951.1-201ENST00000512854 2465 ntBASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 AC126177.1-201ENST00000547829 2218 ntBASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 PTPA-217ENST00000434095 870 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 NUP210P1-202ENST00000504322 710 ntBASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 DUX4L46-201ENST00000566845 751 ntBASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 AC005324.6-201ENST00000587972 613 ntBASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 AC068587.8-201ENST00000641239 219 ntBASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.44□□□□□ -0.1
CCDC3Q9BQI4 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms