Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UBE3BQ7Z3V4 NORAD-201ENST00000565493 5339 ntBASIC18.33■□□□□ 0.52
UBE3BQ7Z3V4 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC18.33■□□□□ 0.52
UBE3BQ7Z3V4 KRT8P19-201ENST00000551916 1455 ntBASIC18.33■□□□□ 0.52
UBE3BQ7Z3V4 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
UBE3BQ7Z3V4 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UBE3BQ7Z3V4 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 PDIA3P2-201ENST00000428073 158 ntBASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 AC073150.1-201ENST00000450406 1084 ntBASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 AC015967.2-201ENST00000624092 234 ntBASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 AC006435.4-201ENST00000625037 234 ntBASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 AL356737.1-201ENST00000634391 234 ntBASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC18.32■□□□□ 0.52
UBE3BQ7Z3V4 AL354702.1-201ENST00000442006 1960 ntBASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 BANP-201ENST00000286122 2368 ntTSL 5 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 XBP1P1-201ENST00000436573 652 ntBASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 AC134698.3-201ENST00000523880 214 ntBASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 AC020922.3-201ENST00000595064 547 ntBASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 CDK7-214ENST00000626796 358 ntTSL 5 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC18.31■□□□□ 0.52
UBE3BQ7Z3V4 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBE3BQ7Z3V4 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBE3BQ7Z3V4 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBE3BQ7Z3V4 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC18.3■□□□□ 0.52
UBE3BQ7Z3V4 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBE3BQ7Z3V4 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBE3BQ7Z3V4 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
UBE3BQ7Z3V4 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBE3BQ7Z3V4 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC18.3■□□□□ 0.52
UBE3BQ7Z3V4 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC18.3■□□□□ 0.52
UBE3BQ7Z3V4 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC18.3■□□□□ 0.52
UBE3BQ7Z3V4 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC18.3■□□□□ 0.52
UBE3BQ7Z3V4 AC116345.2-201ENST00000512837 523 ntBASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms