Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MAPT-IT1-201ENST00000624111 3016 ntBASIC15.7■□□□□ 0.1
LIG3P49916 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LIG3P49916 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
LIG3P49916 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIG3P49916 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 AC063926.2-201ENST00000623766 1308 ntBASIC15.69■□□□□ 0.1
LIG3P49916 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
LIG3P49916 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
LIG3P49916 CU639417.3-201ENST00000624240 1404 ntBASIC15.69■□□□□ 0.1
LIG3P49916 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
LIG3P49916 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.69■□□□□ 0.1
LIG3P49916 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
LIG3P49916 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
LIG3P49916 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
LIG3P49916 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.69■□□□□ 0.1
LIG3P49916 FAM86LP-201ENST00000478302 853 ntBASIC15.69■□□□□ 0.1
LIG3P49916 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.69■□□□□ 0.1
LIG3P49916 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.69■□□□□ 0.1
LIG3P49916 AC239800.4-201ENST00000603712 296 ntBASIC15.69■□□□□ 0.1
LIG3P49916 TMEM261P1-201ENST00000604899 340 ntBASIC15.69■□□□□ 0.1
LIG3P49916 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
LIG3P49916 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
LIG3P49916 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.69■□□□□ 0.1
LIG3P49916 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
LIG3P49916 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
LIG3P49916 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC15.69■□□□□ 0.1
LIG3P49916 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LIG3P49916 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.68■□□□□ 0.1
LIG3P49916 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
LIG3P49916 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC15.68■□□□□ 0.1
LIG3P49916 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.68■□□□□ 0.1
LIG3P49916 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
LIG3P49916 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.68■□□□□ 0.1
LIG3P49916 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC15.68■□□□□ 0.1
LIG3P49916 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC15.68■□□□□ 0.1
LIG3P49916 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
LIG3P49916 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
LIG3P49916 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.68■□□□□ 0.1
LIG3P49916 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.68■□□□□ 0.1
LIG3P49916 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 RN7SL752P-201ENST00000463779 287 ntBASIC15.68■□□□□ 0.1
LIG3P49916 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 AC092552.1-201ENST00000547243 906 ntBASIC15.68■□□□□ 0.1
LIG3P49916 CR383656.12-201ENST00000549567 513 ntBASIC15.68■□□□□ 0.1
LIG3P49916 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LIG3P49916 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
LIG3P49916 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms