Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXA1P49639 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
HOXA1P49639 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC12.4□□□□□ -0.42
HOXA1P49639 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXA1P49639 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXA1P49639 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 ABI1-213ENST00000536334 3380 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXA1P49639 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 STRA6-222ENST00000616000 2843 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
HOXA1P49639 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXA1P49639 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXA1P49639 TP73-201ENST00000346387 4854 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXA1P49639 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.43
HOXA1P49639 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
HOXA1P49639 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.43
HOXA1P49639 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC12.4□□□□□ -0.43
HOXA1P49639 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC12.4□□□□□ -0.43
HOXA1P49639 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
HOXA1P49639 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC12.39□□□□□ -0.43
HOXA1P49639 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
HOXA1P49639 TP73-207ENST00000378290 1831 ntTSL 2 BASIC12.39□□□□□ -0.43
HOXA1P49639 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC12.39□□□□□ -0.43
HOXA1P49639 LINC02188-202ENST00000569740 3775 ntTSL 4 BASIC12.39□□□□□ -0.43
HOXA1P49639 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 KRT74-201ENST00000305620 2788 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 DGKA-202ENST00000394147 2770 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
HOXA1P49639 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
HOXA1P49639 MCL1-204ENST00000620947 3626 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC12.39□□□□□ -0.43
HOXA1P49639 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
HOXA1P49639 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 CD81-202ENST00000381036 880 ntTSL 3 BASIC12.39□□□□□ -0.43
HOXA1P49639 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
HOXA1P49639 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC12.39□□□□□ -0.43
HOXA1P49639 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC12.39□□□□□ -0.43
HOXA1P49639 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC12.39□□□□□ -0.43
HOXA1P49639 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC12.39□□□□□ -0.43
HOXA1P49639 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
HOXA1P49639 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC12.39□□□□□ -0.43
HOXA1P49639 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC12.39□□□□□ -0.43
HOXA1P49639 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
HOXA1P49639 BANF1P1-201ENST00000553684 263 ntBASIC12.39□□□□□ -0.43
HOXA1P49639 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC12.39□□□□□ -0.43
HOXA1P49639 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC12.39□□□□□ -0.43
HOXA1P49639 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC12.39□□□□□ -0.43
HOXA1P49639 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC12.39□□□□□ -0.43
HOXA1P49639 NME4-212ENST00000621774 904 ntTSL 3 BASIC12.39□□□□□ -0.43
HOXA1P49639 CXCR5-201ENST00000292174 4431 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
HOXA1P49639 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC12.39□□□□□ -0.43
HOXA1P49639 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 AC073957.3-201ENST00000609998 6758 ntBASIC12.39□□□□□ -0.43
HOXA1P49639 AL035456.1-201ENST00000456064 1369 ntBASIC12.39□□□□□ -0.43
HOXA1P49639 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
HOXA1P49639 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC12.39□□□□□ -0.43
HOXA1P49639 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC12.39□□□□□ -0.43
HOXA1P49639 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC12.39□□□□□ -0.43
HOXA1P49639 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC12.39□□□□□ -0.43
HOXA1P49639 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HOXA1P49639 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC12.39□□□□□ -0.43
HOXA1P49639 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC12.39□□□□□ -0.43
HOXA1P49639 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXA1P49639 KLF7-204ENST00000423015 1788 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXA1P49639 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC12.38□□□□□ -0.43
HOXA1P49639 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXA1P49639 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
HOXA1P49639 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms