Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC15.18■□□□□ 0.02
HMGA1P17096 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC15.18■□□□□ 0.02
HMGA1P17096 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
HMGA1P17096 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGA1P17096 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGA1P17096 AC006480.2-201ENST00000609770 1337 ntBASIC15.17■□□□□ 0.02
HMGA1P17096 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
HMGA1P17096 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
HMGA1P17096 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
HMGA1P17096 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
HMGA1P17096 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
HMGA1P17096 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
HMGA1P17096 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC15.17■□□□□ 0.02
HMGA1P17096 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 JTB-202ENST00000356648 1040 ntTSL 2 BASIC15.17■□□□□ 0.02
HMGA1P17096 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC15.17■□□□□ 0.02
HMGA1P17096 RPL8P2-201ENST00000430538 502 ntBASIC15.17■□□□□ 0.02
HMGA1P17096 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC15.17■□□□□ 0.02
HMGA1P17096 RPS2P36-201ENST00000456516 831 ntBASIC15.17■□□□□ 0.02
HMGA1P17096 NEU3-205ENST00000531619 582 ntTSL 5 BASIC15.17■□□□□ 0.02
HMGA1P17096 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC15.17■□□□□ 0.02
HMGA1P17096 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC15.17■□□□□ 0.02
HMGA1P17096 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC15.17■□□□□ 0.02
HMGA1P17096 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC15.17■□□□□ 0.02
HMGA1P17096 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC15.17■□□□□ 0.02
HMGA1P17096 DRG2-220ENST00000583355 891 ntTSL 3 BASIC15.17■□□□□ 0.02
HMGA1P17096 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
HMGA1P17096 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC15.17■□□□□ 0.02
HMGA1P17096 SPCS2P2-201ENST00000603270 608 ntBASIC15.17■□□□□ 0.02
HMGA1P17096 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC15.17■□□□□ 0.02
HMGA1P17096 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.17■□□□□ 0.02
HMGA1P17096 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.17■□□□□ 0.02
HMGA1P17096 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
HMGA1P17096 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC15.17■□□□□ 0.02
HMGA1P17096 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGA1P17096 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
HMGA1P17096 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
HMGA1P17096 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGA1P17096 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
HMGA1P17096 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
HMGA1P17096 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGA1P17096 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
HMGA1P17096 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
HMGA1P17096 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGA1P17096 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGA1P17096 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGA1P17096 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGA1P17096 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGA1P17096 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC15.16■□□□□ 0.02
HMGA1P17096 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HMGA1P17096 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.16■□□□□ 0.02
HMGA1P17096 AC215219.1-201ENST00000400706 1817 ntBASIC15.16■□□□□ 0.02
HMGA1P17096 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGA1P17096 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGA1P17096 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGA1P17096 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGA1P17096 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGA1P17096 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGA1P17096 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGA1P17096 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGA1P17096 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC15.16■□□□□ 0.02
HMGA1P17096 AC069218.1-201ENST00000435269 762 ntBASIC15.16■□□□□ 0.02
HMGA1P17096 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC15.16■□□□□ 0.02
HMGA1P17096 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC15.16■□□□□ 0.02
HMGA1P17096 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGA1P17096 RPSAP15-201ENST00000448168 861 ntBASIC15.16■□□□□ 0.02
HMGA1P17096 FGFR3P1-201ENST00000449999 601 ntBASIC15.16■□□□□ 0.02
HMGA1P17096 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGA1P17096 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC15.16■□□□□ 0.02
HMGA1P17096 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGA1P17096 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms