Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
SPTA1P02549 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC13.36□□□□□ -0.27
SPTA1P02549 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
SPTA1P02549 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
SPTA1P02549 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
SPTA1P02549 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC13.36□□□□□ -0.27
SPTA1P02549 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC13.36□□□□□ -0.27
SPTA1P02549 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC13.36□□□□□ -0.27
SPTA1P02549 AC007326.1-201ENST00000604539 458 ntBASIC13.36□□□□□ -0.27
SPTA1P02549 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
SPTA1P02549 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
SPTA1P02549 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
SPTA1P02549 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC13.36□□□□□ -0.27
SPTA1P02549 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.36□□□□□ -0.27
SPTA1P02549 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
SPTA1P02549 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC13.36□□□□□ -0.27
SPTA1P02549 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13.36□□□□□ -0.27
SPTA1P02549 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
SPTA1P02549 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
SPTA1P02549 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC13.36□□□□□ -0.27
SPTA1P02549 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC13.36□□□□□ -0.27
SPTA1P02549 ABR-203ENST00000536794 2213 ntTSL 2 BASIC13.36□□□□□ -0.27
SPTA1P02549 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC13.36□□□□□ -0.27
SPTA1P02549 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
SPTA1P02549 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
SPTA1P02549 BAK1P1-201ENST00000317045 636 ntBASIC13.35□□□□□ -0.27
SPTA1P02549 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
SPTA1P02549 MBP-201ENST00000354542 575 ntTSL 2 BASIC13.35□□□□□ -0.27
SPTA1P02549 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC13.35□□□□□ -0.27
SPTA1P02549 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC13.35□□□□□ -0.27
SPTA1P02549 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC13.35□□□□□ -0.27
SPTA1P02549 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC13.35□□□□□ -0.27
SPTA1P02549 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC13.35□□□□□ -0.27
SPTA1P02549 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC13.35□□□□□ -0.27
SPTA1P02549 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
SPTA1P02549 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 AC092299.1-201ENST00000632679 757 ntBASIC13.35□□□□□ -0.27
SPTA1P02549 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.35□□□□□ -0.27
SPTA1P02549 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC13.35□□□□□ -0.27
SPTA1P02549 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SPTA1P02549 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
SPTA1P02549 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
SPTA1P02549 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
SPTA1P02549 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 FTX-216ENST00000638985 1367 ntTSL 5 BASIC13.35□□□□□ -0.27
SPTA1P02549 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC13.35□□□□□ -0.27
SPTA1P02549 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.35□□□□□ -0.27
SPTA1P02549 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC13.35□□□□□ -0.27
SPTA1P02549 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC13.35□□□□□ -0.27
SPTA1P02549 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13.35□□□□□ -0.27
SPTA1P02549 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
SPTA1P02549 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 FRMD6-AS1-201ENST00000617151 2229 ntBASIC13.35□□□□□ -0.27
SPTA1P02549 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
SPTA1P02549 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SPTA1P02549 AL596087.1-201ENST00000400979 1969 ntBASIC13.35□□□□□ -0.27
SPTA1P02549 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC13.35□□□□□ -0.27
SPTA1P02549 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
SPTA1P02549 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC13.35□□□□□ -0.27
SPTA1P02549 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC13.35□□□□□ -0.27
SPTA1P02549 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC13.35□□□□□ -0.27
SPTA1P02549 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC13.35□□□□□ -0.27
SPTA1P02549 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC13.35□□□□□ -0.27
SPTA1P02549 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.35□□□□□ -0.27
SPTA1P02549 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
SPTA1P02549 AC027237.1-201ENST00000560942 655 ntBASIC13.35□□□□□ -0.27
SPTA1P02549 DBP-202ENST00000593500 712 ntTSL 2 BASIC13.35□□□□□ -0.27
SPTA1P02549 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
SPTA1P02549 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC13.35□□□□□ -0.27
SPTA1P02549 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms