Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDKL5O76039 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDKL5O76039 AC006001.1-201ENST00000325130 474 ntBASIC17.22■□□□□ 0.35
CDKL5O76039 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDKL5O76039 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CDKL5O76039 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDKL5O76039 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC17.22■□□□□ 0.35
CDKL5O76039 AHRR-211ENST00000515206 462 ntTSL 5 BASIC17.22■□□□□ 0.35
CDKL5O76039 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC17.22■□□□□ 0.35
CDKL5O76039 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.22■□□□□ 0.35
CDKL5O76039 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC17.22■□□□□ 0.35
CDKL5O76039 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
CDKL5O76039 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.22■□□□□ 0.35
CDKL5O76039 RN7SL713P-201ENST00000582127 302 ntBASIC17.22■□□□□ 0.35
CDKL5O76039 APOC4-201ENST00000591600 348 ntTSL 3 BASIC17.22■□□□□ 0.35
CDKL5O76039 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CDKL5O76039 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDKL5O76039 LINC02084-201ENST00000606069 1096 ntBASIC17.22■□□□□ 0.35
CDKL5O76039 AC002472.3-201ENST00000640124 621 ntBASIC17.22■□□□□ 0.35
CDKL5O76039 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDKL5O76039 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC17.22■□□□□ 0.35
CDKL5O76039 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CDKL5O76039 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDKL5O76039 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CDKL5O76039 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDKL5O76039 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDKL5O76039 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC17.22■□□□□ 0.35
CDKL5O76039 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDKL5O76039 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDKL5O76039 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDKL5O76039 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CDKL5O76039 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC17.21■□□□□ 0.35
CDKL5O76039 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDKL5O76039 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDKL5O76039 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC17.21■□□□□ 0.35
CDKL5O76039 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDKL5O76039 HSPA7-201ENST00000445535 1927 ntBASIC17.21■□□□□ 0.35
CDKL5O76039 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC17.21■□□□□ 0.35
CDKL5O76039 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDKL5O76039 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDKL5O76039 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.21■□□□□ 0.35
CDKL5O76039 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDKL5O76039 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CDKL5O76039 AL590440.2-201ENST00000641973 1595 ntBASIC17.21■□□□□ 0.35
CDKL5O76039 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.21■□□□□ 0.35
CDKL5O76039 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDKL5O76039 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDKL5O76039 BOLA2P3-201ENST00000404566 256 ntBASIC17.21■□□□□ 0.35
CDKL5O76039 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CDKL5O76039 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDKL5O76039 COX5BP1-201ENST00000507622 393 ntBASIC17.21■□□□□ 0.35
CDKL5O76039 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDKL5O76039 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.21■□□□□ 0.35
CDKL5O76039 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.21■□□□□ 0.35
CDKL5O76039 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.21■□□□□ 0.35
CDKL5O76039 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
CDKL5O76039 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC17.21■□□□□ 0.35
CDKL5O76039 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CDKL5O76039 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDKL5O76039 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDKL5O76039 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CDKL5O76039 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CDKL5O76039 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.21■□□□□ 0.34
CDKL5O76039 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
CDKL5O76039 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 KHSRPP1-201ENST00000427983 1768 ntBASIC17.2■□□□□ 0.34
CDKL5O76039 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC17.2■□□□□ 0.34
CDKL5O76039 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 AC152010.1-201ENST00000415779 2006 ntBASIC17.2■□□□□ 0.34
CDKL5O76039 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC17.2■□□□□ 0.34
CDKL5O76039 AC090505.1-201ENST00000430515 1834 ntBASIC17.2■□□□□ 0.34
CDKL5O76039 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC17.2■□□□□ 0.34
CDKL5O76039 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 AL136309.1-201ENST00000403917 691 ntBASIC17.2■□□□□ 0.34
CDKL5O76039 AP003171.2-201ENST00000528208 925 ntBASIC17.2■□□□□ 0.34
CDKL5O76039 AP000812.2-201ENST00000538934 718 ntBASIC17.2■□□□□ 0.34
CDKL5O76039 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.2■□□□□ 0.34
CDKL5O76039 ORC6-206ENST00000568364 888 ntTSL 5 BASIC17.2■□□□□ 0.34
CDKL5O76039 AC106886.1-201ENST00000568660 600 ntBASIC17.2■□□□□ 0.34
CDKL5O76039 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
CDKL5O76039 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC17.2■□□□□ 0.34
CDKL5O76039 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC17.2■□□□□ 0.34
CDKL5O76039 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC17.2■□□□□ 0.34
CDKL5O76039 RHOXF1P1-202ENST00000635473 501 ntBASIC17.2■□□□□ 0.34
CDKL5O76039 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.2■□□□□ 0.34
CDKL5O76039 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC17.2■□□□□ 0.34
CDKL5O76039 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC17.2■□□□□ 0.34
CDKL5O76039 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDKL5O76039 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC17.2■□□□□ 0.34
CDKL5O76039 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms