Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 INTS4P1-203ENST00000641008 3683 ntBASIC14.98□□□□□ -0.01
TRIM38O00635 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM38O00635 ACE3P-201ENST00000423435 1973 ntBASIC14.98□□□□□ -0.01
TRIM38O00635 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.98□□□□□ -0.01
TRIM38O00635 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM38O00635 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.98□□□□□ -0.01
TRIM38O00635 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM38O00635 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
TRIM38O00635 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM38O00635 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRIM38O00635 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 AC015818.8-201ENST00000587907 1519 ntBASIC14.97□□□□□ -0.01
TRIM38O00635 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
TRIM38O00635 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
TRIM38O00635 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.97□□□□□ -0.01
TRIM38O00635 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.97□□□□□ -0.01
TRIM38O00635 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM38O00635 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
TRIM38O00635 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 TPM3P8-201ENST00000330554 643 ntBASIC14.97□□□□□ -0.01
TRIM38O00635 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
TRIM38O00635 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.97□□□□□ -0.01
TRIM38O00635 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC14.97□□□□□ -0.01
TRIM38O00635 ARTN-209ENST00000479128 471 ntTSL 3 BASIC14.97□□□□□ -0.01
TRIM38O00635 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM38O00635 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.97□□□□□ -0.01
TRIM38O00635 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
TRIM38O00635 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.97□□□□□ -0.01
TRIM38O00635 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM38O00635 RN7SL48P-201ENST00000579283 293 ntBASIC14.97□□□□□ -0.01
TRIM38O00635 CYGB-203ENST00000589145 788 ntTSL 3 BASIC14.97□□□□□ -0.01
TRIM38O00635 AL096828.3-201ENST00000615354 462 ntBASIC14.97□□□□□ -0.01
TRIM38O00635 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.97□□□□□ -0.01
TRIM38O00635 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
TRIM38O00635 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM38O00635 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.97□□□□□ -0.01
TRIM38O00635 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.97□□□□□ -0.01
TRIM38O00635 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM38O00635 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM38O00635 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM38O00635 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.97□□□□□ -0.01
TRIM38O00635 LINC01230-201ENST00000625222 3017 ntBASIC14.97□□□□□ -0.01
TRIM38O00635 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.01
TRIM38O00635 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
TRIM38O00635 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
TRIM38O00635 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRIM38O00635 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
TRIM38O00635 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
TRIM38O00635 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.96□□□□□ -0.01
TRIM38O00635 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.96□□□□□ -0.01
TRIM38O00635 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM38O00635 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM38O00635 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.96□□□□□ -0.01
TRIM38O00635 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.96□□□□□ -0.01
TRIM38O00635 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM38O00635 BEND3P1-201ENST00000421591 1944 ntBASIC14.96□□□□□ -0.01
TRIM38O00635 HSPA7-201ENST00000445535 1927 ntBASIC14.96□□□□□ -0.01
TRIM38O00635 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.96□□□□□ -0.01
TRIM38O00635 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM38O00635 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM38O00635 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM38O00635 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM38O00635 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM38O00635 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM38O00635 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM38O00635 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRIM38O00635 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
TRIM38O00635 AC004945.1-201ENST00000416738 983 ntBASIC14.96□□□□□ -0.01
TRIM38O00635 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC14.96□□□□□ -0.01
TRIM38O00635 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.96□□□□□ -0.01
TRIM38O00635 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
TRIM38O00635 IGHJ2P-201ENST00000454480 60 ntBASIC14.96□□□□□ -0.01
TRIM38O00635 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms