Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.05■□□□□ 0
SHROOM3Q8TF72 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.05■□□□□ 0
SHROOM3Q8TF72 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC15.05■□□□□ 0
SHROOM3Q8TF72 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.05■□□□□ 0
SHROOM3Q8TF72 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.05■□□□□ 0
SHROOM3Q8TF72 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.05■□□□□ 0
SHROOM3Q8TF72 ACTG1P17-201ENST00000558391 1119 ntBASIC15.05■□□□□ 0
SHROOM3Q8TF72 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC15.05■□□□□ 0
SHROOM3Q8TF72 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.05■□□□□ 0
SHROOM3Q8TF72 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
SHROOM3Q8TF72 AL023775.1-201ENST00000454907 1746 ntBASIC15.05■□□□□ 0
SHROOM3Q8TF72 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.05■□□□□ 0
SHROOM3Q8TF72 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
SHROOM3Q8TF72 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC15.05■□□□□ 0
SHROOM3Q8TF72 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SHROOM3Q8TF72 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SHROOM3Q8TF72 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
SHROOM3Q8TF72 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15.05■□□□□ 0
SHROOM3Q8TF72 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.05■□□□□ 0
SHROOM3Q8TF72 HSPA7-201ENST00000445535 1927 ntBASIC15.05■□□□□ -0
SHROOM3Q8TF72 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC15.05■□□□□ -0
SHROOM3Q8TF72 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
SHROOM3Q8TF72 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.05■□□□□ -0
SHROOM3Q8TF72 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC15.05■□□□□ -0
SHROOM3Q8TF72 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHROOM3Q8TF72 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHROOM3Q8TF72 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.05■□□□□ -0
SHROOM3Q8TF72 GGCT-203ENST00000409144 836 ntTSL 2 BASIC15.05■□□□□ -0
SHROOM3Q8TF72 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.05■□□□□ -0
SHROOM3Q8TF72 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC15.05■□□□□ -0
SHROOM3Q8TF72 ABBA01031663.1-201ENST00000635630 790 ntBASIC15.05■□□□□ -0
SHROOM3Q8TF72 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.05■□□□□ -0
SHROOM3Q8TF72 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
SHROOM3Q8TF72 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
SHROOM3Q8TF72 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.05■□□□□ -0
SHROOM3Q8TF72 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHROOM3Q8TF72 AC244394.1-201ENST00000435000 1665 ntBASIC15.05■□□□□ -0
SHROOM3Q8TF72 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SHROOM3Q8TF72 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
SHROOM3Q8TF72 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC15.05■□□□□ -0
SHROOM3Q8TF72 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
SHROOM3Q8TF72 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 AC010141.1-201ENST00000411585 623 ntBASIC15.04■□□□□ -0
SHROOM3Q8TF72 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 AC005962.1-201ENST00000584100 773 ntBASIC15.04■□□□□ -0
SHROOM3Q8TF72 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 EIF4HP1-201ENST00000453115 687 ntBASIC15.04■□□□□ -0
SHROOM3Q8TF72 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 RPL13AP20-201ENST00000459725 609 ntBASIC15.04■□□□□ -0
SHROOM3Q8TF72 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 NAT9-224ENST00000583757 583 ntTSL 3 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.04■□□□□ -0
SHROOM3Q8TF72 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC15.04■□□□□ -0
SHROOM3Q8TF72 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms