Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AC018529.2-202ENST00000611482 3087 ntBASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 REXO1L2P-201ENST00000425429 2069 ntBASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 POM121L8P-201ENST00000417732 1281 ntBASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 POM121L9P-203ENST00000441984 1285 ntBASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 WASH3P-207ENST00000560956 1394 ntBASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC144BQ3MJ40 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 AL137784.3-201ENST00000623858 2288 ntBASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 ELK2AP-201ENST00000392510 1007 ntBASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 HNRNPA1P63-201ENST00000427917 963 ntBASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 RN7SL713P-201ENST00000582127 302 ntBASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 OR10B1P-201ENST00000601666 907 ntBASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 AC073413.1-201ENST00000603927 732 ntBASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC144BQ3MJ40 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CCDC144BQ3MJ40 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CCDC144BQ3MJ40 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
CCDC144BQ3MJ40 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
CCDC144BQ3MJ40 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC17.21■□□□□ 0.34
CCDC144BQ3MJ40 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
CCDC144BQ3MJ40 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC17.21■□□□□ 0.34
CCDC144BQ3MJ40 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC144BQ3MJ40 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC144BQ3MJ40 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC17.2■□□□□ 0.34
CCDC144BQ3MJ40 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC144BQ3MJ40 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC144BQ3MJ40 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC144BQ3MJ40 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
CCDC144BQ3MJ40 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC144BQ3MJ40 AP000845.1-201ENST00000581677 2131 ntBASIC17.2■□□□□ 0.34
CCDC144BQ3MJ40 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC144BQ3MJ40 CNTNAP3P2-201ENST00000617175 3861 ntBASIC17.2■□□□□ 0.34
CCDC144BQ3MJ40 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC144BQ3MJ40 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms