Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 MIR6842-201ENST00000612539 65 ntBASIC14.31□□□□□ -0.12
COL28A1Q2UY09 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 AC087481.3-201ENST00000602886 1894 ntBASIC14.31□□□□□ -0.12
COL28A1Q2UY09 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 CICP14-201ENST00000629111 2732 ntBASIC14.3□□□□□ -0.12
COL28A1Q2UY09 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 RNU1-114P-201ENST00000365297 166 ntBASIC14.3□□□□□ -0.12
COL28A1Q2UY09 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 RPS9P1-201ENST00000419943 583 ntBASIC14.3□□□□□ -0.12
COL28A1Q2UY09 BUD31-205ENST00000456893 512 ntTSL 5 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 IGHV3-37-201ENST00000518544 340 ntBASIC14.3□□□□□ -0.12
COL28A1Q2UY09 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 AC242376.1-201ENST00000559033 726 ntBASIC14.3□□□□□ -0.12
COL28A1Q2UY09 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 AL022344.2-201ENST00000568976 968 ntBASIC14.3□□□□□ -0.12
COL28A1Q2UY09 RN7SL713P-201ENST00000582127 302 ntBASIC14.3□□□□□ -0.12
COL28A1Q2UY09 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 KRT8P4-201ENST00000509735 1454 ntBASIC14.3□□□□□ -0.12
COL28A1Q2UY09 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.3□□□□□ -0.12
COL28A1Q2UY09 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 AC136621.1-201ENST00000624017 2304 ntBASIC14.29□□□□□ -0.12
COL28A1Q2UY09 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 NPPA-201ENST00000376476 728 ntTSL 3 BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms